RNA id: TU1585747


Basic Information

Item Value
RNA id TU1585747
length 988
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G1388423
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 53435452 ~ 53436439 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtcccactaaccgcaaaccagatgggatggcaaatcgttgcaaaatgctgtggtagccatgctggttaagtgtgccttgaattctaaataaatcactgacggtgtcaacagcaaagcatccccacaccatcacacctcctcctctatgcttcagggtgggaaccacacatgcagagatcatccgttcacctactctgcatctcacaaagacacagtggttggaaccaaaaatctcaaattgggactcatcagaccaaaggacagatttccattgtttgtgtttcttggcccaggcaagtctcttcttattggtgtcctttagtcatGGTTTCTTTGTAAAAATGTGATCATGAAGGCCttattcatgcagtctcctctgaacagttaatgttgagatgtgtctgttacttgaaccctgtgaataatttatttcaacttcaatttctgaggctggtaacttgtcctctacagcagaggtaattctgggtcttcctttcctgtggcagtcctcatgagagccagttttattaTAGAGCTtgatttttgtgactgcacttgaagaaacttttaaagttcttgaaattttctggattgactgaccatcatgTTTTAAAGTAAAGATGGATtattctctttgcttttttgagctgttcttaatatggacttggtcttttaccaaataaggctatcttctgtataccacacataccttgtcacaacacaactgattggctcaaatgcattatgaaggaatgaaattccaatttaacaaaggcacacctgttaattgaaatgcattcctcatgaagctggttgagagaatgctcaatgtttctgacttgcctagttaaataaaggttcaataaaaatgccaagagagtgcaaagctgtcatctaggcaaatggtggctactttgaagaatctcaaatataacaaatatttttatttgtttaatacttttttggttactgcatgattccatatgtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1585745 lncRNA downstream 2715 53432268 ~ 53432737 (-) True G1388421
TU1585742 lncRNA downstream 4467 53430755 ~ 53430985 (-) True G1388418
TU1585738 lncRNA downstream 5115 53429708 ~ 53430337 (-) False G1388417
TU1585739 lncRNA downstream 5146 53429708 ~ 53430306 (-) True G1388417
TU1585734 lncRNA downstream 5201 53429614 ~ 53430251 (-) False G1388417
TU1585799 lncRNA upstream 58046 53494485 ~ 53497266 (-) True G1388466
TU1585783 lncRNA upstream 62085 53498524 ~ 53499614 (-) False G1388454
TU1585784 lncRNA upstream 62085 53498524 ~ 53499881 (-) True G1388454
TU1585779 lncRNA upstream 65327 53501766 ~ 53502074 (-) False G1388453
TU1585782 lncRNA upstream 65327 53501766 ~ 53502137 (-) True G1388453
XM_021566483.2 mRNA downstream 58460 53326457 ~ 53376992 (-) True LOC110492286
XM_021566480.2 mRNA downstream 85993 53324324 ~ 53349459 (-) False LOC110492286
XM_036947246.1 mRNA downstream 85993 53326457 ~ 53349459 (-) False LOC110492286
XM_021566481.2 mRNA downstream 85998 53326457 ~ 53349454 (-) False LOC110492286
XM_021566478.2 mRNA downstream 121894 53303341 ~ 53313558 (-) True LOC110492285
LOC110491099 mRNA upstream 2553 53438992 ~ 53440261 (-) True LOC110491099
XM_021566494.2 mRNA upstream 170971 53607410 ~ 53616535 (-) False LOC110492292
XM_021566493.2 mRNA upstream 170971 53607410 ~ 53617096 (-) True LOC110492292
XM_021566492.2 mRNA upstream 181094 53617533 ~ 53633437 (-) True LOC110492291
XM_036947260.1 mRNA upstream 203431 53639870 ~ 53655680 (-) False LOC110492293
TU1585503 other downstream 402531 53031932 ~ 53032921 (-) True G1388236
TU1585247 other downstream 863145 52571710 ~ 52572307 (-) True LOC110492250
TU1585179 other downstream 1006693 52418876 ~ 52428759 (-) True spen
TU1583828 other downstream 1445457 51983134 ~ 51989995 (-) True LOC110492226
TU1582837 other downstream 2320387 51113403 ~ 51115065 (-) True dffb
TU1585952 other upstream 293898 53730337 ~ 53732915 (-) True LOC110492299
TU1587231 other upstream 1108289 54544728 ~ 54545243 (-) True G1389763
TU1587517 other upstream 1548379 54984818 ~ 54986263 (-) True G1390030
TU1588497 other upstream 2387720 55824159 ~ 55826631 (-) True LOC110492352
TU1589255 other upstream 2628064 56064503 ~ 56064862 (-) True G1391586

Expression Profile