RNA id: TU1585822


Basic Information

Item Value
RNA id TU1585822
length 1062
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G1388481
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 53518199 ~ 53519260 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCAAATGTAAAATAAGTTACATTATGCCTGAAACAAGGAAATACATTGGTCCATTTACAAGTACAATATAATGATTTCCATAATTACATTTATGGGTGATAATTGGCAGGATATTTTAGCATATTGTTCTATATAGTATGCTGTACCTAACGTGTGACTGTTTTTTAGCCAAGAACACATTTAtgctagcctgagtgccagtctgtttctgctctcttgacTACTCCTTTGGGTGTTGTAACACCAAACATTGTCAGGCTACATTTATGCTCCAAAAACAGACATTGTAACAATGCCCTACATATTTACTAGTTTTTTGCATTTTTTGAGTTGGTGTCAAAGTTTAGTGTAACATCCATGTTGATTGCTCATGCTATCCCATTTCTGTGTTCTATATTGTAACAATAGAATCTTCTCATTCGGACTGTTCTTTGGTAAACAAAGGTTACGTAGGTTGCTACTCAAATCAATGCAATGGACATAAGTGTGCATTAGACTGCTGTGTGCCGGTCCcttgtcctcctctctgtccctttaCTTCCAGCTCAAGCCAGATCTTAAAGAACCCCCTGGCAGCAGAGGTCCTCTTTGAAAGGGTGGTGTTTGTAGGCCAAATATAGTACAACTACGATTTCAAGAGAATGCTGAATGATCTCTCCAAAGTAAGGTACAGATttatgatcttaatttgatcactcttttgttactAAGATTTTTCCTGCAccgcaggaaatgcagatgagctttgatatatacataaattcactgaaaacccacagtaacacacagttatattaactgtattgcacttttcatgtagcctacttttggccagctaatagcctaaccaccgatcaagcaacattatggactaaatgtTAAAATCCTGTAGGTGCAGGAtaattttgctgtgacaatatagtGTAGGTCAAAtgaaaatcctacatctgtagtaaggctgtgttcaatcaatgaaacatacactcttagaaacctgaaagggttcttcagctgtcctcatagaagaaccctttgaagaatcctttttggttccaggtagaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1585782 lncRNA downstream 16062 53501766 ~ 53502137 (-) True G1388453
TU1585779 lncRNA downstream 16125 53501766 ~ 53502074 (-) False G1388453
TU1585784 lncRNA downstream 18318 53498524 ~ 53499881 (-) True G1388454
TU1585783 lncRNA downstream 18585 53498524 ~ 53499614 (-) False G1388454
TU1585799 lncRNA downstream 20933 53494485 ~ 53497266 (-) True G1388466
TU1585823 lncRNA upstream 89 53519349 ~ 53519871 (-) True G1388482
TU1585857 lncRNA upstream 43714 53562974 ~ 53626438 (-) True G1388516
TU1585864 lncRNA upstream 47151 53566411 ~ 53569175 (-) False G1388521
TU1585865 lncRNA upstream 48611 53567871 ~ 53568231 (-) True G1388521
TU1585821 lncRNA upstream 78817 53598077 ~ 53599765 (-) True G1388480
LOC110491099 mRNA downstream 77938 53438992 ~ 53440261 (-) True LOC110491099
XM_021566483.2 mRNA downstream 141207 53326457 ~ 53376992 (-) True LOC110492286
XM_021566480.2 mRNA downstream 168740 53324324 ~ 53349459 (-) False LOC110492286
XM_021566494.2 mRNA upstream 88150 53607410 ~ 53616535 (-) False LOC110492292
XM_021566493.2 mRNA upstream 88150 53607410 ~ 53617096 (-) True LOC110492292
XM_021566492.2 mRNA upstream 98273 53617533 ~ 53633437 (-) True LOC110492291
XM_036947260.1 mRNA upstream 120610 53639870 ~ 53655680 (-) False LOC110492293
XM_036947259.1 mRNA upstream 120610 53639870 ~ 53657572 (-) False LOC110492293
TU1585503 other downstream 485278 53031932 ~ 53032921 (-) True G1388236
TU1585247 other downstream 945892 52571710 ~ 52572307 (-) True LOC110492250
TU1585179 other downstream 1089440 52418876 ~ 52428759 (-) True spen
TU1583828 other downstream 1528204 51983134 ~ 51989995 (-) True LOC110492226
TU1582837 other downstream 2403134 51113403 ~ 51115065 (-) True dffb
TU1585952 other upstream 211077 53730337 ~ 53732915 (-) True LOC110492299
TU1587231 other upstream 1025468 54544728 ~ 54545243 (-) True G1389763
TU1587517 other upstream 1465558 54984818 ~ 54986263 (-) True G1390030
TU1588497 other upstream 2304899 55824159 ~ 55826631 (-) True LOC110492352
TU1589255 other upstream 2545243 56064503 ~ 56064862 (-) True G1391586

Expression Profile