RNA id: TU1585864


Basic Information

Item Value
RNA id TU1585864
length 807
lncRNA type intronic
GC content 0.39
exon number 3
gene id G1388521
representative False

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 53566411 ~ 53569175 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aacaaGTATAGTGTAAAGAGTCATTATACAATCTaaactagggatgcacgatacCAAATCGGTAAATATATCTGAATCGGACggtattagctaaaaatgccaacatcaacCCATTGTCTAGTTTAACACCgttgtgcaaaaccgatgtcaaagctgacgtgcatacctatataaacgtaggtagatgacgtgcatacctatataaacgtaggtagatgacgtccatacctatataacgtaggtagatgacgtccatacctatataaacgtaggtagatgacgtccaTACCTATATAAGCGTAGGTAGATGACATGCATACCTATagaaacgtaggtagatgacatgcatacctatataaacgtaggtagatgacgtgcatacctatataaacgtaggtagatgacgtgcatacctatataaacgtaggtagatgacgtccatacctatataaacgtaggtagatgacgtccatacctatataaacgtaggtagatgacgtccatacctatataaacgtaggtagatgacgtccatacctatataaacgtaggtagatgacgtccatacctatataacgtaggtagatgacgtacatacctatataacgtaggtagatgacgtacatacctatataacgtaggtagatgacgtacatacctacataacgtaggtagatgacgtacatacctacataacgtaggtagatgaaaAATACAGCGCTACACAGCATttctaacctagcccacaatgtctgctgtgtggatcgaacAGTCAACAAGCCAAggagtcatttgaaagagtaagaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1585823 lncRNA downstream 46540 53519349 ~ 53519871 (-) True G1388482
TU1585822 lncRNA downstream 47151 53518199 ~ 53519260 (-) True G1388481
TU1585782 lncRNA downstream 64274 53501766 ~ 53502137 (-) True G1388453
TU1585779 lncRNA downstream 64337 53501766 ~ 53502074 (-) False G1388453
TU1585784 lncRNA downstream 66530 53498524 ~ 53499881 (-) True G1388454
TU1585821 lncRNA upstream 28902 53598077 ~ 53599765 (-) True G1388480
TU1585877 lncRNA upstream 100543 53669718 ~ 53671690 (-) True G1388532
TU1585924 lncRNA upstream 114743 53683918 ~ 53684208 (-) True G1388578
TU1585929 lncRNA upstream 133825 53703000 ~ 53703266 (-) True G1388583
TU1585944 lncRNA upstream 147565 53716740 ~ 53717064 (-) True LOC110491101
LOC110491099 mRNA downstream 126150 53438992 ~ 53440261 (-) True LOC110491099
XM_021566483.2 mRNA downstream 189419 53326457 ~ 53376992 (-) True LOC110492286
XM_021566480.2 mRNA downstream 216952 53324324 ~ 53349459 (-) False LOC110492286
XM_021566494.2 mRNA upstream 38235 53607410 ~ 53616535 (-) False LOC110492292
XM_021566493.2 mRNA upstream 38235 53607410 ~ 53617096 (-) True LOC110492292
XM_021566492.2 mRNA upstream 48358 53617533 ~ 53633437 (-) True LOC110492291
XM_036947260.1 mRNA upstream 70695 53639870 ~ 53655680 (-) False LOC110492293
XM_036947259.1 mRNA upstream 70695 53639870 ~ 53657572 (-) False LOC110492293
TU1585503 other downstream 533490 53031932 ~ 53032921 (-) True G1388236
TU1585247 other downstream 994104 52571710 ~ 52572307 (-) True LOC110492250
TU1585179 other downstream 1137652 52418876 ~ 52428759 (-) True spen
TU1583828 other downstream 1576416 51983134 ~ 51989995 (-) True LOC110492226
TU1582837 other downstream 2451346 51113403 ~ 51115065 (-) True dffb
TU1585952 other upstream 161162 53730337 ~ 53732915 (-) True LOC110492299
TU1587231 other upstream 975553 54544728 ~ 54545243 (-) True G1389763
TU1587517 other upstream 1415643 54984818 ~ 54986263 (-) True G1390030
TU1588497 other upstream 2254984 55824159 ~ 55826631 (-) True LOC110492352
TU1589255 other upstream 2495328 56064503 ~ 56064862 (-) True G1391586

Expression Profile