RNA id: TU1586922


Basic Information

Item Value
RNA id TU1586922
length 1332
lncRNA type antisense_over
GC content 0.47
exon number 6
gene id G1389489
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 54056237 ~ 54058839 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCACAAGGTAAACTATTCAAGTCCCAAACATACCAAACAGTCCCTTCCGTGCTGGGTTCACCATGGCCAGATCATTGCAAGGGCTCCCACCAATGAGCAGATCGAACGGACCCCACTTTAGGATGTGCTCTTTGGTGATGAGCCGGACATCATCCACATGTATGATCTTGCCTTCATGGTTGATCTCAGAAACAGCAATGGACTCCGAACAGATCTCCGAGGCCACATATTTGTCCACCTTGAATCCCAGCTCTTTCAGCACCAAGTAACCTGTGCCAATCCCATCAAACAGTGAGAGGACGCTGATTGGTCGACGCAGGTTGGCAGGGATGGACGGGTATACCCGATCGGGCTCAAACTGAAAGGCACTGTTATTTGCAAAAAACTCCTGGACACGGATGCTCCAGTCAAGACGGGGTTTCAGGGCACCGTGGGCATTGTGTGGTTCACACAGGTAGCAGATCCATGGATCCACCTCCTTCAGAGAGTCAAAGGTACCTGGGCCAACCAAGATGTTTAGGCAGTCCAAACAGTAGGAGCGGCAGCAGCTGTCGTTCCCACAGAGGATGACCTCCAGGCCAGCACAGCACACTGTACAGTATGACTGGTAGCCATCCTCATCGTATCGATAGAGAGTCTCAGTGAAGTTATCCTTGCATTTAAGGCAAAGGCTTCCTTCAAACAGTGGATGGAAAATCTCTATATCGTCAGCCATACAGCACAGGCAGAAAGCTTTGGAAGATTGTAATTTTCTAAGTGAGTGAACAAAACAATGAAGGAAACAGACTTCCAACACAATACCACTATTTAATACAAAAGTGTCCATGTCAGCACAAGCTCTCACCTTCAATGTCCAGTCTTTTCTTCTGTACCCTTTGAACCATCTCCTCTGAGAAAATAAAGAtacaaaatacagtatattaaatgTGTGCAGAGTGCATTGAGAAAAGTAAACAAGTAGGAAATAACGCCGTTGGAAGTGATTTGAAACAATTATTAACAGAGTATATATATATCAGCGTGAAGAAAGTAGAGAAGGCCCACCTCTGTATTTCTGATCCGGCTGTTCATAGACGTAGCCTGGGTCTTCTTTTTTGTTGGACTGCTGCTTTTGTTTTTTGAGTGGTGGCTGGCAGTCTGGACTTTGATCATTTTTCTCCATGTTGGACGAGGCACCTGCATCCTCCTCCTGCCTGAGGTTGAAGGTGCCGTTGTCCAGGTTCAGCGAGAGCTTggtgagacacacagacacctggCTCATGTTGTGCAGTTCGCTGTTGATGGATGTTGCCTTTTTTTGGTCCGGTTGCGTCCCATTAGCAATCCCTTTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1586912 lncRNA downstream 16770 54039250 ~ 54039467 (-) True G1389479
TU1586910 lncRNA downstream 18577 54037394 ~ 54037660 (-) True G1389477
TU1586758 lncRNA downstream 210119 53845871 ~ 53846118 (-) True G1389332
TU1586757 lncRNA downstream 211078 53844859 ~ 53845159 (-) True G1389331
TU1586742 lncRNA downstream 230343 53825674 ~ 53825894 (-) True G1389316
TU1586925 lncRNA upstream 80 54058919 ~ 54059264 (-) True G1389490
TU1586926 lncRNA upstream 1399 54060238 ~ 54060683 (-) True G1389491
TU1586927 lncRNA upstream 1957 54060796 ~ 54061250 (-) True G1389492
TU1586931 lncRNA upstream 9269 54068108 ~ 54068314 (-) True G1389496
TU1586902 lncRNA upstream 14860 54073699 ~ 54077975 (-) True G1389471
XM_036945764.1 mRNA downstream 88102 53958415 ~ 53968135 (-) True commd7
XM_021564407.2 mRNA downstream 88111 53956911 ~ 53968126 (-) False commd7
NM_001165191.2 mRNA downstream 88142 53957921 ~ 53968095 (-) False commd7
XM_036947269.1 mRNA downstream 136890 53776878 ~ 53919347 (-) False LOC110491103
XM_036947268.1 mRNA downstream 136894 53776878 ~ 53919343 (-) False LOC110491103
XM_036947294.1 mRNA upstream 108541 54167380 ~ 54236936 (-) False LOC110491105
XM_036947295.1 mRNA upstream 108541 54167380 ~ 54236936 (-) False LOC110491105
XM_036947296.1 mRNA upstream 108541 54167380 ~ 54236936 (-) False LOC110491105
XM_036947297.1 mRNA upstream 108541 54167380 ~ 54236936 (-) False LOC110491105
XM_036947298.1 mRNA upstream 108541 54167380 ~ 54236936 (-) False LOC110491105
TU1585952 other downstream 323322 53730337 ~ 53732915 (-) True LOC110492299
TU1585503 other downstream 1023316 53031932 ~ 53032921 (-) True G1388236
TU1585247 other downstream 1483930 52571710 ~ 52572307 (-) True LOC110492250
TU1585179 other downstream 1627478 52418876 ~ 52428759 (-) True spen
TU1583828 other downstream 2066242 51983134 ~ 51989995 (-) True LOC110492226
TU1587231 other upstream 485889 54544728 ~ 54545243 (-) True G1389763
TU1587517 other upstream 925979 54984818 ~ 54986263 (-) True G1390030
TU1588497 other upstream 1765320 55824159 ~ 55826631 (-) True LOC110492352
TU1589255 other upstream 2005664 56064503 ~ 56064862 (-) True G1391586
TU1589295 other upstream 2166575 56225414 ~ 56226061 (-) True G1391624

Expression Profile