RNA id: TU1586905


Basic Information

Item Value
RNA id TU1586905
length 270
lncRNA type antisense_over
GC content 0.59
exon number 2
gene id G1389472
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 54112674 ~ 54114811 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTCATGGGCGTGGCAGCAGGTAGAGGAGTCAACACGTGGCCACCGGTCTCAGTCTGCCAGAAGGTGTCGACCACGGGGCACCTCTTCTCCCCCACCACGCTGTAGTACCACTGCCACGCCTCCGGGTTGATGGGCTCCCCCACCGTCCCCAGCACCTTCAGAGAATCCCGCTTGTACCTGACACACACACGGAGGGAAAGGGTTAACAGAGACCCCCATAGCCTCAGACAAAAGGACgaaaccaaaacatgcagacaTTTGccaacacac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1586948 lncRNA downstream 17978 54095680 ~ 54095947 (-) True G1389512
TU1586945 lncRNA downstream 23108 54090582 ~ 54090817 (-) True G1389509
TU1586942 lncRNA downstream 26656 54087052 ~ 54087269 (-) True G1389506
TU1586902 lncRNA downstream 35950 54073699 ~ 54077975 (-) True G1389471
TU1586931 lncRNA downstream 45611 54068108 ~ 54068314 (-) True G1389496
TU1586907 lncRNA upstream 1652 54116463 ~ 54140078 (-) True G1389474
TU1586969 lncRNA upstream 26405 54141216 ~ 54141627 (-) True G1389533
TU1586973 lncRNA upstream 29996 54144807 ~ 54145085 (-) True G1389537
TU1586984 lncRNA upstream 48747 54163558 ~ 54168597 (-) False LOC110491105
TU1586985 lncRNA upstream 50649 54165460 ~ 54168972 (-) True LOC110491105
XM_036945764.1 mRNA downstream 145790 53958415 ~ 53968135 (-) True commd7
XM_021564407.2 mRNA downstream 145799 53956911 ~ 53968126 (-) False commd7
NM_001165191.2 mRNA downstream 145830 53957921 ~ 53968095 (-) False commd7
XM_036947269.1 mRNA downstream 194578 53776878 ~ 53919347 (-) False LOC110491103
XM_036947268.1 mRNA downstream 194582 53776878 ~ 53919343 (-) False LOC110491103
XM_036947294.1 mRNA upstream 52569 54167380 ~ 54236936 (-) False LOC110491105
XM_036947295.1 mRNA upstream 52569 54167380 ~ 54236936 (-) False LOC110491105
XM_036947296.1 mRNA upstream 52569 54167380 ~ 54236936 (-) False LOC110491105
XM_036947297.1 mRNA upstream 52569 54167380 ~ 54236936 (-) False LOC110491105
XM_036947298.1 mRNA upstream 52569 54167380 ~ 54236936 (-) False LOC110491105
TU1585952 other downstream 381010 53730337 ~ 53732915 (-) True LOC110492299
TU1585503 other downstream 1081004 53031932 ~ 53032921 (-) True G1388236
TU1585247 other downstream 1541618 52571710 ~ 52572307 (-) True LOC110492250
TU1585179 other downstream 1685166 52418876 ~ 52428759 (-) True spen
TU1583828 other downstream 2123930 51983134 ~ 51989995 (-) True LOC110492226
TU1587231 other upstream 429917 54544728 ~ 54545243 (-) True G1389763
TU1587517 other upstream 870007 54984818 ~ 54986263 (-) True G1390030
TU1588497 other upstream 1709348 55824159 ~ 55826631 (-) True LOC110492352
TU1589255 other upstream 1949692 56064503 ~ 56064862 (-) True G1391586
TU1589295 other upstream 2110603 56225414 ~ 56226061 (-) True G1391624

Expression Profile