RNA id: TU1587081


Basic Information

Item Value
RNA id TU1587081
length 213
lncRNA type intronic
GC content 0.74
exon number 1
gene id G1389626
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 54331090 ~ 54331302 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gagggacagctgctcgggacagagggacagctgctcgggacagagggacagctgctcgggacagagggacagctgctccgggcggaggggctctagcggcccctggctgactggcggcccctggctgactggcggcactggcggcccctggctgactggcggcccctggctgactggcggcactggcggcccctggttgactggcggcgctgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1587076 lncRNA downstream 16806 54314084 ~ 54314284 (-) True G1389621
TU1587056 lncRNA downstream 37593 54280545 ~ 54293497 (-) True LOC110492306
TU1587047 lncRNA downstream 66882 54263604 ~ 54264208 (-) True G1389598
TU1587025 lncRNA downstream 98741 54231486 ~ 54232349 (-) True G1389582
TU1586985 lncRNA downstream 162118 54165460 ~ 54168972 (-) True LOC110491105
TU1587089 lncRNA upstream 12843 54344145 ~ 54344470 (-) True G1389634
TU1587091 lncRNA upstream 14189 54345491 ~ 54345692 (-) True G1389636
TU1587096 lncRNA upstream 18075 54349377 ~ 54349614 (-) True G1389641
TU1587105 lncRNA upstream 36642 54367944 ~ 54368155 (-) True G1389650
TU1587111 lncRNA upstream 43539 54374841 ~ 54375072 (-) True G1389656
XM_036947295.1 mRNA downstream 94154 54167380 ~ 54236936 (-) False LOC110491105
XM_036945787.1 mRNA upstream 304083 54635385 ~ 54635876 (-) True LOC118936330
LOC110491107 mRNA upstream 308169 54639471 ~ 54640714 (-) True LOC110491107
XM_036947320.1 mRNA upstream 624560 54955862 ~ 54957989 (-) False si:dkey-20d21.12
XM_036947321.1 mRNA upstream 624560 54955862 ~ 54957989 (-) False si:dkey-20d21.12
XM_036947324.1 mRNA upstream 835461 55166763 ~ 55209300 (-) False sema3b
TU1585952 other downstream 598175 53730337 ~ 53732915 (-) True LOC110492299
TU1585503 other downstream 1298169 53031932 ~ 53032921 (-) True G1388236
TU1585247 other downstream 1758783 52571710 ~ 52572307 (-) True LOC110492250
TU1585179 other downstream 1902331 52418876 ~ 52428759 (-) True spen
TU1583828 other downstream 2341095 51983134 ~ 51989995 (-) True LOC110492226
TU1587231 other upstream 213426 54544728 ~ 54545243 (-) True G1389763
TU1587517 other upstream 653516 54984818 ~ 54986263 (-) True G1390030
TU1588497 other upstream 1492857 55824159 ~ 55826631 (-) True LOC110492352
TU1589255 other upstream 1733201 56064503 ~ 56064862 (-) True G1391586
TU1589295 other upstream 1894112 56225414 ~ 56226061 (-) True G1391624

Expression Profile