RNA id: TU1587105


Basic Information

Item Value
RNA id TU1587105
length 212
lncRNA type intronic
GC content 0.42
exon number 1
gene id G1389650
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 54367944 ~ 54368155 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aaaaaattctgaaactttgaacatcccacggagcaccattaaattttttttttttaaatggaaagaatatggtacCAAAACAAACCTATCAAGAgaaggccgcccaccaaaactcatggaccaggcaaggagagcattaatcagagaggcaacaaagagaccaaagataaccctgaaggagctgcaaagctccacagcggcgattggagtat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1587096 lncRNA downstream 18330 54349377 ~ 54349614 (-) True G1389641
TU1587091 lncRNA downstream 22252 54345491 ~ 54345692 (-) True G1389636
TU1587089 lncRNA downstream 23474 54344145 ~ 54344470 (-) True G1389634
TU1587081 lncRNA downstream 36642 54331090 ~ 54331302 (-) True G1389626
TU1587076 lncRNA downstream 53660 54314084 ~ 54314284 (-) True G1389621
TU1587111 lncRNA upstream 6686 54374841 ~ 54375072 (-) True G1389656
TU1587175 lncRNA upstream 89066 54457221 ~ 54462767 (-) True G1389707
TU1587221 lncRNA upstream 162469 54530624 ~ 54530955 (-) True G1389753
TU1587222 lncRNA upstream 163062 54531217 ~ 54531427 (-) True G1389754
TU1587232 lncRNA upstream 178690 54546845 ~ 54547138 (-) True G1389764
XM_036947295.1 mRNA downstream 131008 54167380 ~ 54236936 (-) False LOC110491105
XM_036945787.1 mRNA upstream 267230 54635385 ~ 54635876 (-) True LOC118936330
LOC110491107 mRNA upstream 271316 54639471 ~ 54640714 (-) True LOC110491107
XM_036947320.1 mRNA upstream 587707 54955862 ~ 54957989 (-) False si:dkey-20d21.12
XM_036947321.1 mRNA upstream 587707 54955862 ~ 54957989 (-) False si:dkey-20d21.12
XM_036947324.1 mRNA upstream 798608 55166763 ~ 55209300 (-) False sema3b
TU1585952 other downstream 635029 53730337 ~ 53732915 (-) True LOC110492299
TU1585503 other downstream 1335023 53031932 ~ 53032921 (-) True G1388236
TU1585247 other downstream 1795637 52571710 ~ 52572307 (-) True LOC110492250
TU1585179 other downstream 1939185 52418876 ~ 52428759 (-) True spen
TU1583828 other downstream 2377949 51983134 ~ 51989995 (-) True LOC110492226
TU1587231 other upstream 176573 54544728 ~ 54545243 (-) True G1389763
TU1587517 other upstream 616663 54984818 ~ 54986263 (-) True G1390030
TU1588497 other upstream 1456004 55824159 ~ 55826631 (-) True LOC110492352
TU1589255 other upstream 1696348 56064503 ~ 56064862 (-) True G1391586
TU1589295 other upstream 1857259 56225414 ~ 56226061 (-) True G1391624

Expression Profile