RNA id: TU1587222


Basic Information

Item Value
RNA id TU1587222
length 211
lncRNA type intronic
GC content 0.37
exon number 1
gene id G1389754
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 54531217 ~ 54531427 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cttctcaaacatgGCAGAAAGCTAACACAATATGATGCCTGTCACCTTATTCATTTAGCCACTTACTTAGATAGCAAGTTAAACTTAGAGGTCGTGTTAACGCAGAATTCTGTGTTTGTCACAAAGGGAAAAAATAAATATCTTGCTGCATTTGGAAACGCAGATCTAAAATGGTTCTCATTGTACTTTCTGCTCGACATCAGACTAActt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1587221 lncRNA downstream 262 54530624 ~ 54530955 (-) True G1389753
TU1587175 lncRNA downstream 68450 54457221 ~ 54462767 (-) True G1389707
TU1587111 lncRNA downstream 156145 54374841 ~ 54375072 (-) True G1389656
TU1587105 lncRNA downstream 163062 54367944 ~ 54368155 (-) True G1389650
TU1587096 lncRNA downstream 181603 54349377 ~ 54349614 (-) True G1389641
TU1587232 lncRNA upstream 15418 54546845 ~ 54547138 (-) True G1389764
TU1587233 lncRNA upstream 18048 54549475 ~ 54549838 (-) True G1389765
TU1587239 lncRNA upstream 20693 54552120 ~ 54556071 (-) True G1389769
TU1587235 lncRNA upstream 30075 54561502 ~ 54566568 (-) True G1389766
TU1587240 lncRNA upstream 36716 54568143 ~ 54568364 (-) True G1389770
XM_021566517.2 mRNA downstream 75201 54280345 ~ 54456016 (-) False LOC110492306
XM_036947296.1 mRNA downstream 294281 54167380 ~ 54236936 (-) False LOC110491105
XM_036945787.1 mRNA upstream 103958 54635385 ~ 54635876 (-) True LOC118936330
LOC110491107 mRNA upstream 108044 54639471 ~ 54640714 (-) True LOC110491107
XM_036947320.1 mRNA upstream 424435 54955862 ~ 54957989 (-) False si:dkey-20d21.12
XM_036947321.1 mRNA upstream 424435 54955862 ~ 54957989 (-) False si:dkey-20d21.12
XM_036947324.1 mRNA upstream 635336 55166763 ~ 55209300 (-) False sema3b
TU1585952 other downstream 798302 53730337 ~ 53732915 (-) True LOC110492299
TU1585503 other downstream 1498296 53031932 ~ 53032921 (-) True G1388236
TU1585247 other downstream 1958910 52571710 ~ 52572307 (-) True LOC110492250
TU1585179 other downstream 2102458 52418876 ~ 52428759 (-) True spen
TU1583828 other downstream 2541222 51983134 ~ 51989995 (-) True LOC110492226
TU1587231 other upstream 13301 54544728 ~ 54545243 (-) True G1389763
TU1587517 other upstream 453391 54984818 ~ 54986263 (-) True G1390030
TU1588497 other upstream 1292732 55824159 ~ 55826631 (-) True LOC110492352
TU1589255 other upstream 1533076 56064503 ~ 56064862 (-) True G1391586
TU1589295 other upstream 1693987 56225414 ~ 56226061 (-) True G1391624

Expression Profile