RNA id: TU1587235


Basic Information

Item Value
RNA id TU1587235
length 1844
lncRNA type antisense_over
GC content 0.45
exon number 5
gene id G1389766
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 54561502 ~ 54566568 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAGAAAGTAATTTATTACACAATGTAACCAAGGCTAGTTTACAAATACAGTTCCAGTCATGTATGTGTATACATATGAATATACCCACGTCTTATATTTACAGATTTGCATACATGTTTTCCTGTTTATTCATTTCAACACTTACTTTACGGTTTCACATCCAAAAACTAAAATGATTTGTACATAAGAGACTTAAAGGAGTTCAGCCCTGTGTGTTCCAAACAAAGAAACGGCAGCCAGCCCAGAGTCCAGGCAGACAGAGCACTTGACTGGCAGTCCAGAGGCCAGCCCTTCTCACGACTGCCCCAACAACAGCATTTGGCAGGTGAAATTTAAATACTGATAAATGTTTACCATGACTTAAAAAAATAAGATGAATAAAAACCAAACATCAACAAAAAAATTATACGATCTAAGATCATCTCCCAAAGCAAGGACACGAGCTCCAACGGTCGGTCGGCAAGTGTGAGGGGGTCGGGGGGTTGGTGAGATGTAAACAGGTGCTTATCCAACCCCCTTTGTCCATCCACACACTTGCCAGAGCCCCTGGTACAGGGACTGAGTCCTGTCATACAGTCTACAGAAGGAGACATTTATTGCTTTTCTTTCCTCGCCGGGCCTGTAGTGCCGCCCTGGTGGCCATCTCAAACACCTCCCGCACGCCATCCTTCGTCTTGGCCGAGCACTCCATATAGCCGAACGCTCCGATCCGGTTGGCCATGTCACGGGCCTCCTCTGGCTTCACTGGCTCctgcttcatcttggccagctCCCGGCGTGTGTGTTCATCATTGCGCAGGTCCTTCTTATTGCCTACGAGGATGATGGGAACGTTTGGACAGAAGTGTTTGACCTCTGGAGTCCACTTCTCTGGAATGTTCTCCAAGCTGTCTGGGCTGTCAATGGAGAAGCACATGAGGATGACGTCAGTGTCGGGGTAGGAGAGGGGGCGAAGCCTGTCGTAGTCCTCTTGGCCAGCTGTATCCCACAGAGCCAGCTCCACCTGTTTGCTGTCCACCTCAATGTCAGCCACATAGTTCTCAAAGACAGTGGGTACGTAGACCTCAGGGAACtggtctttactgaagactatcAACAGACAGGTCTTCCCACAAGCACCATCTCCCACAATCACCAGCTTCTTACGAATCGCTGCCATGCCTGTTGTTTAGATGGCTGCAGTCGTTTTCCCAGGGCTGTCTTGCTTCGCCGTTAACCCTCGTTTCGATACAATGTTGAATTACTTTGCGTGTGCACGCGAGGGGGAGGGGTGGCGGGGACGAGCGTGAGCCACGCCTGCGCGTGCACGTCACCCGGTTTCGATGAGCATCCAAACCGTTTTGATTTGGTTTTTCAATAATAGTTGCATTCCAAAACTTTTTCCACACAAAATAAATGTTAGAAAGGACCCAAGAAGTGGACAGGTTATGCTTCCTTCCTTCGCATTGGGTCATTCTACGAAAATGGTGGCTTTGCTGTCCCAGCCATAACCACCAGGAAAAACAGTTCGTGTCAGATAATGACAAAGTATATTGTTAATAAAACATATGTAAGACAGTTAAATTGCAAACCatgttttgtatatattttaGAGTCGATGTTTAGTGACAtattttgattttaaaaaagttttttttttctcccacttTAAATGTCATAAAGCAAAAGAAAGTATAAGCTTTATGTTGTGGCCTACTTAAAAACAAATATAAATATCAACTCATTATTCAAAATAATTTTGTGAATAGCTGTCCCTCAATTCCATGTCACTGGTGTTACCACTGAGGGGTGTTACCCTTTATAAAATGCACCACTTTGAAAAGATTCAACCATTTGGCAACTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1587239 lncRNA downstream 5431 54552120 ~ 54556071 (-) True G1389769
TU1587233 lncRNA downstream 11664 54549475 ~ 54549838 (-) True G1389765
TU1587232 lncRNA downstream 14364 54546845 ~ 54547138 (-) True G1389764
TU1587222 lncRNA downstream 30075 54531217 ~ 54531427 (-) True G1389754
TU1587221 lncRNA downstream 30547 54530624 ~ 54530955 (-) True G1389753
TU1587240 lncRNA upstream 1575 54568143 ~ 54568364 (-) True G1389770
TU1587241 lncRNA upstream 2023 54568591 ~ 54569290 (-) True G1389771
TU1587250 lncRNA upstream 13054 54579622 ~ 54579826 (-) True G1389777
TU1587312 lncRNA upstream 103458 54670026 ~ 54700613 (-) True G1389837
TU1587317 lncRNA upstream 114763 54681331 ~ 54682335 (-) True G1389841
XM_021566517.2 mRNA downstream 105486 54280345 ~ 54456016 (-) False LOC110492306
XM_036947296.1 mRNA downstream 324566 54167380 ~ 54236936 (-) False LOC110491105
XM_036945787.1 mRNA upstream 68817 54635385 ~ 54635876 (-) True LOC118936330
LOC110491107 mRNA upstream 72903 54639471 ~ 54640714 (-) True LOC110491107
XM_036947320.1 mRNA upstream 389294 54955862 ~ 54957989 (-) False si:dkey-20d21.12
XM_036947321.1 mRNA upstream 389294 54955862 ~ 54957989 (-) False si:dkey-20d21.12
XM_036947324.1 mRNA upstream 600195 55166763 ~ 55209300 (-) False sema3b
TU1587231 other downstream 16259 54544728 ~ 54545243 (-) True G1389763
TU1585952 other downstream 828587 53730337 ~ 53732915 (-) True LOC110492299
TU1585503 other downstream 1528581 53031932 ~ 53032921 (-) True G1388236
TU1585247 other downstream 1989195 52571710 ~ 52572307 (-) True LOC110492250
TU1585179 other downstream 2132743 52418876 ~ 52428759 (-) True spen
TU1587517 other upstream 418250 54984818 ~ 54986263 (-) True G1390030
TU1588497 other upstream 1257591 55824159 ~ 55826631 (-) True LOC110492352
TU1589255 other upstream 1497935 56064503 ~ 56064862 (-) True G1391586
TU1589295 other upstream 1658846 56225414 ~ 56226061 (-) True G1391624
TU1589358 other upstream 1714484 56281052 ~ 56293472 (-) True LOC110492371

Expression Profile