RNA id: TU1587440


Basic Information

Item Value
RNA id TU1587440
length 4582
lncRNA type antisense_over
GC content 0.40
exon number 3
gene id G1389961
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 54910015 ~ 54914644 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAACAGTCAAGGTTTATTGGTAACATTGTTTGAATAGGTTTTAGCTTATTTAGTAAGTTTCTTGTTTCTCAGTGGTCACAAGTCATTTCAAAACATCATATGTTACAGCAGTTCGTGTTACAAAAATGTTCAGTTTGAGGAATACAAACGACAGATCATTAAACATTGTTCCAACATCTTCCATCAGTCTCTCATCAACATTTTGTACGTAACCAAAACCATCATAGCACCAGACCTAGGTCAAATACTGTATTTGATgtgatttgcacttttgggactatttcaTTGGTTCCATTGTACTGGGCATGCCAAATCAAGTGCAGCTCAACTATTTGAAAGTATGTATCTATTAGACCCAGAGAACacctagggctctattcaatctgtagtGCTGAAGCGTTACAGTTGCACGATAAAAACGTTCCTGATTGTTCCGACATCTGCAGCTTTTACCGTCAGCTAACATGGGAACTTTGTCTTTAAATTTTAATGATACAAATTGAATGGAGCCCCTATTGGCCAAATTTGTCTCCAGTCTGATTTTatttgccccccccctcccccctctagtTTTCTGAGCAGAAAATACAAGTTTAATTGttagacataaaaaaaaacagtgaaaacaccagcaaatctgttccaagtattcccacacataatagagagatatatCTGATCAtttacaaatgtaagcaaggtttgaaaataTGATGTTTTAGTGAAATGTTATATATGTTTGGGTTTCTTgctgtcaatttgcagtctacaaattatttgcaaTTATTTTCCGGCCCCCTGATCATCCGctcaagaagaaaaaaaaatcagccggcggctgaatctagttgatgataccTGTCTACTGTATGAGGTGATTCAGCAATAACTGTTGGATTGGCTCAAGCCCCTGTCTCTAGAGACTGACTGCTGTTTGGCATGGCTGATTCTagtgcagtgtttcccaactctggtcctccagtaccccaacagcacacattttagTTGTAGCCCTGaacaaacacacctcattcagctcaatgagggcttgatgattagttgacaagtagaatcaggtgtgcttgtccaggccCACAACAAAATGATATGGGGAGAGTTGGGTAAATTGAGCCGCCCTTGTTTCTAGGAAGCCATACACAGAATGGACCAAATATTTAGAAAGAGATCCTAATTGCATGTAGTCTGGGAAgaaagaaaccacatggaaacagTACTAAACAAGTTCGGTCCAGAAAACAAATAttcaccaagtcaaatgaatTTATTGATTGGTCAGTTGGGGTCAACCTttgcatgaaagtgcatccttgtagctgtgtagGCTAATATaatcaaaatgtttgccttggggtaagtttaGCCAATGGCTATGGGTTAAGTTTAGCCAATGGCTATGGGTTAAGTTGAGCCAATGGCaagttgagcaaattgaaGCATTTCTTCCCAGGCGTGTCCTCAAACTGTTTTTGAAAAGTGCAAAGTGTTTATCATGTGTTAAGACTGTGTTAAAATATGATTAATAGACTAATGtgattgtgtttgggaaataaagacatgtgtttaaaAAGGTAGGGGTAATAATtaattcagtacagaaatgtATAGGTGGCTTAACTTACTCTGTCCTGCGGGTCAACTTAACCCATACCTGAGGTAAGCTAGGTTTTCAAAactaatgtttacatgaattctgattatttccagggacaCATAACATTCTGAAAAAAtgactcaacttaccccactcttccctactgttgggggtactaaaGGACCGgtgttgggaaacactgttctaGTGGGTCACATGAGAATGTAGTTTAAGCCCTTCAGCAATTTTCAGTCAGTCTTTAAGTGACCAAGGAGCCCAAGTTATTTTCACACAGGTTCTGGGAATAAAGCACAAAGCAACACGAATCACATAGTAAAATAAATTACACTTCATAAAATGGGCCATTCAGATTCTTACTGTATGTCCTTCTCAATTTCAGTTATCAGGTATTAGTTCTGAACGCTCAATAAAAAGTAAGTTGACTATAGTATAAAACCCTTATGTTCCACATCACGTTACTTTAAGTTAAGAATGCATAACAATAGAGTAGACAAGATCAATAAAAGTAGTTATATAGATGCAAACAGAATAATACTTATGTCCTTCACATATTATTCAATTTGTTATGAGCAATCTGACAGTTTATCAATATTTATTGATAAGAACATGTCTGGTTTCAGGAGTAACACATTTACAATTGGACAAATTCTGCCCTTTTCAAATATATGCCACCATATTGTTCTTAAAATGTGTGTTATTTAAAAACGGGTCATTCAGTTCACACACACAATGCTGATTTACTTTGTCCAAGATGTCCGACTGTTGTGTTCAATGTAATCTACTCACATTCGCCGTTTCATGGAATGGCTACATCCGTTTACACAGCACAACTTCACATGTACATAGCAGACATTGGATGAATATAACATCTGAATTTCTTCGGCTGTGAGTGATGAAGGAAAGAAACGGCCTCAGCAACAATTTGAATAATTAAATGGATGTTTTGTGCATAAAGATGACTAACGTGTCTTTTATTAGGAATGTTCTAATCTGACTTCTCTTAGCCAcagaggtgtcataatacccataaaacctagtggtcaaacaggaaaatggttccaatcatttctCCATCATTCATATCCATAGGTGactttagaaacacttaaaataagggctgtgtttcgtgtaggcttaccctggtgtgacgtttTAATAACTGTGTAAATCTCACTCAggcaaggtgacttttatcaatatgttTGGCTCTATTACTCTGATTCAAAAATGCTATTtggcatcaaagtagacatcatgcaaaactacaaatccctgcaagctcctgcacgtcatctctagctgacaccttagTTAATccagattcttacctttgccttgaTTCAGCTGTCtcatccagatcatcatggcatttgtagtagttaatgatagccacattagcagctaattagcatttgatttttggggggtaaatacaAGAGAATATATATTGAtataagtcaccttgtccgagacaGATTTACACGGTTATTAAAACATCATGCCAGGGGGGaacatttatggtggaaaaacgattggaaccagtTCCTTgcttgaccgctaggttttatggctattatgactcatactgtggtattCTATATGGCCAACTAAGGAAATGTAATTTCTGGGCCGGGTAtcagttaaactgcagtaccAAAGCAAGACTGCCGGAGCAGTCAAAACCGTGCTTATAGACAGAAACCCTGGCCCCTTGGTTGAGTTACTAACAATGGTCTATTGACAAATGTCTAGTCAATTGAATTTCACTTTATTAAATGCTTGACGCATCAGACAATTAGATTCACCAGTCTTCCCCTTACAAAACAACTTCCACCATTTAAAAGAGGAATATCGGTAACATGGATATTTCACATTATACATTAAAATCTGTATTAGTCGTTTGCAATGCAAACTATGGAGAAACACAGATAAATGGTGAGGTTGTAGGTGATGAATTGAGGCCGTCATCTTTTTCAATATAAGAACTGTAGCGAAGTGACGCCTTTGTCTGTACACAGCATGTACTGTATAATGATTCACAGCATGTACTGTATAATGATTCACAGCATGCCTCACCTTACTGTGGTGCTCTAATGGATTCAGCCTTTTTTTCCATAGGGTTTTTCCTGAGGTGTTGCCATAGTAACGGGCAACTTCTCCATCTTGGGTTGCAGCCACCTATACCCTGTAGTTCTGATAGATGACCACTAGTGGCAGCAATCTGGGGAGCTGGGTGTTCAAACAAGTCCAAAATGTTTGACTCTATGAACAAAGGATCTGAGATATGGTGGGGATAACAAAGGCCAGTTGTCTCCATGGCAACACACAAAAGGGAACACCTCAGCCTGGGCAAATTCAATATGTTTCTGTTGGCCTATTGAACACTGTGGTTACAAAGGAGGAAAAAACCCCTCTGTGAATTGTGCCTGGCCTAGCTCTCAGCATTGTTCCCTTTGAACTCAGTACAGGGAGACATGGCTGATATATGTACTATGAAATGCTGCCTGGCAGCTGGGGCACAACTGTTGTCCCTAATGAAGAGCTTAGAAAATCTGCTCCTACATTGGCCATGGGGGTCAAAGGTCACTGACAAGTTGACCTTAAGGAAACCTCCTGTGGGCCTCCTGACCTGTCACCCCCCACTTCTCCCCAGAGGACCAAGAGGTTTTAAGTCTGACTGACGTGCACAAGGCTGGGGTTGGGGTAAGGTGCAGTTAACTACATTTGTACTGCAAATGATCGCTACTGGTGGGCTAGCAGTAGAGTATATGCTGTCAGTACAAATGTATTTAGGTCATACAGTGGGTTGTGGGGTGAAGAGGAGGGGACTAGGAGCCCTGAGAAGGAGACACAGCGAGACGCTCAGAGATCCAGCCAGTGACTTCCTTCAGCACCGCCGCCACCGTCTCTGGGAGTTCATGGTGCAGGACGTGGTATGCTCCTTCGTAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1587465 lncRNA downstream 20917 54888815 ~ 54889098 (-) True G1389986
TU1587464 lncRNA downstream 22049 54887655 ~ 54887966 (-) True G1389985
TU1587414 lncRNA downstream 88148 54813332 ~ 54821867 (-) True G1389935
TU1587350 lncRNA downstream 152895 54736013 ~ 54757120 (-) True G1389871
TU1587338 lncRNA downstream 191538 54711177 ~ 54718477 (-) False G1389861
TU1587479 lncRNA upstream 658 54915302 ~ 54915518 (-) True G1389999
TU1587484 lncRNA upstream 7826 54922470 ~ 54922918 (-) True G1390004
TU1587446 lncRNA upstream 23040 54937684 ~ 54939641 (-) True G1389967
TU1587439 lncRNA upstream 28263 54942907 ~ 54943850 (-) True G1389960
TU1587494 lncRNA upstream 31834 54946478 ~ 54956113 (-) True si:dkey-20d21.12
LOC110491107 mRNA downstream 269301 54639471 ~ 54640714 (-) True LOC110491107
XM_036945787.1 mRNA downstream 274139 54635385 ~ 54635876 (-) True LOC118936330
XM_021566517.2 mRNA downstream 453999 54280345 ~ 54456016 (-) False LOC110492306
XM_036947298.1 mRNA downstream 673079 54167380 ~ 54236936 (-) False LOC110491105
XM_036947320.1 mRNA upstream 41218 54955862 ~ 54957989 (-) False si:dkey-20d21.12
XM_036947321.1 mRNA upstream 41218 54955862 ~ 54957989 (-) False si:dkey-20d21.12
XM_036947324.1 mRNA upstream 252119 55166763 ~ 55209300 (-) False sema3b
XM_036947323.1 mRNA upstream 252119 55166763 ~ 55255351 (-) False sema3b
XM_036947325.1 mRNA upstream 252119 55166763 ~ 55255352 (-) False sema3b
TU1587231 other downstream 364772 54544728 ~ 54545243 (-) True G1389763
TU1585952 other downstream 1177100 53730337 ~ 53732915 (-) True LOC110492299
TU1585503 other downstream 1877094 53031932 ~ 53032921 (-) True G1388236
TU1585247 other downstream 2337708 52571710 ~ 52572307 (-) True LOC110492250
TU1585179 other downstream 2481256 52418876 ~ 52428759 (-) True spen
TU1587517 other upstream 70174 54984818 ~ 54986263 (-) True G1390030
TU1588497 other upstream 909515 55824159 ~ 55826631 (-) True LOC110492352
TU1589255 other upstream 1149859 56064503 ~ 56064862 (-) True G1391586
TU1589295 other upstream 1310770 56225414 ~ 56226061 (-) True G1391624
TU1589358 other upstream 1366408 56281052 ~ 56293472 (-) True LOC110492371

Expression Profile