RNA id: TU1587517


Basic Information

Item Value
RNA id TU1587517
length 597
RNA type TUCP
GC content 0.62
exon number 5
gene id G1390030
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 54984818 ~ 54986263 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTAGCAGCACAGTGAGGCGGGAGGCGGGGCAGAGGGTGACGAGTAGAGCCCAGGCGTGCAGGGCGGCGCTGTGGAGCCCAGGGGTACCGGCCTTGGGGGTGGGCAGGGTGCCCTCAAAGTTGGGGTACGACGTGGTGAACACACTTTCCAGGTGACTCATGGATTTGACCAAGTCCTCTCCATCTTCCGCAGCAGAAACATAGCAGCACATACCCAGAGCACTGGCACAGCTCTGGCGGGCGGCCACACTGGCACAGCCGTCAATCATGATGGCGCTGAGGACGGGTCGAAGGATCTTGAAGCCCTCCTCGCTCTCGTCCCCCCCGCCCAGCTGCACACACAGCTGGGCACACACTGTGGCCGCTGCAGCCTGCTCCTCTCCACCACCCTTGCGCAGGCTCCTCTCCAGGCAGTCGCTGATGGTGAGGCGTCTCTCTGTCAGGAAGTCACAGAGCAGCCTGGATGAGAAGGCCCCTCTCAGAGACTCCAGGGCTGCCAGGCGTGTCTTTGCACTCTTGTCCATCAGGTTGTCTATGCATTGTTTCAGCTTGTCCTCGGTCTCTTCCTGGGCAGTCTGTTCATCTAGTGGCTCACCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1587504 lncRNA downstream 14524 54970033 ~ 54970294 (-) True G1390017
TU1587444 lncRNA downstream 17755 54966441 ~ 54967063 (-) True G1389965
TU1587494 lncRNA downstream 28705 54946478 ~ 54956113 (-) True si:dkey-20d21.12
TU1587439 lncRNA downstream 40968 54942907 ~ 54943850 (-) True G1389960
TU1587446 lncRNA downstream 45177 54937684 ~ 54939641 (-) True G1389967
TU1587702 lncRNA upstream 86101 55072364 ~ 55072714 (-) True G1390199
TU1587744 lncRNA upstream 153817 55140080 ~ 55140423 (-) True G1390240
TU1587745 lncRNA upstream 155945 55142208 ~ 55142489 (-) True G1390241
TU1587746 lncRNA upstream 156646 55142909 ~ 55143242 (-) True G1390242
TU1587778 lncRNA upstream 174105 55160368 ~ 55160650 (-) True G1390252
XM_036947320.1 mRNA downstream 26829 54955862 ~ 54957989 (-) False si:dkey-20d21.12
XM_036947321.1 mRNA downstream 26829 54955862 ~ 54957989 (-) False si:dkey-20d21.12
LOC110491107 mRNA downstream 344104 54639471 ~ 54640714 (-) True LOC110491107
XM_036945787.1 mRNA downstream 348942 54635385 ~ 54635876 (-) True LOC118936330
XM_021566517.2 mRNA downstream 528802 54280345 ~ 54456016 (-) False LOC110492306
XM_036947324.1 mRNA upstream 180500 55166763 ~ 55209300 (-) False sema3b
XM_036947323.1 mRNA upstream 180500 55166763 ~ 55255351 (-) False sema3b
XM_036947325.1 mRNA upstream 180500 55166763 ~ 55255352 (-) False sema3b
XM_021566550.2 mRNA upstream 363881 55350144 ~ 55372295 (-) True actr8
XM_021566552.2 mRNA upstream 389472 55375735 ~ 55383019 (-) False LOC110492331
TU1587231 other downstream 439575 54544728 ~ 54545243 (-) True G1389763
TU1585952 other downstream 1251903 53730337 ~ 53732915 (-) True LOC110492299
TU1585503 other downstream 1951897 53031932 ~ 53032921 (-) True G1388236
TU1585247 other downstream 2412511 52571710 ~ 52572307 (-) True LOC110492250
TU1585179 other downstream 2556059 52418876 ~ 52428759 (-) True spen
TU1588497 other upstream 837896 55824159 ~ 55826631 (-) True LOC110492352
TU1589255 other upstream 1078240 56064503 ~ 56064862 (-) True G1391586
TU1589295 other upstream 1239151 56225414 ~ 56226061 (-) True G1391624
TU1589358 other upstream 1294789 56281052 ~ 56293472 (-) True LOC110492371
TU1589476 other upstream 1438009 56424272 ~ 56437279 (-) False G1391796

Expression Profile