RNA id: TU1587778



Basic Information


Item Value
RNA id TU1587778
length 283
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G1390252
representative True

Chromosome Information


Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 55160368 ~ 55160650 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


tttagaactgcgacctggccaagataaagcaaagcagtgcaacacaaacaacaacacagagttacacatggaattgtcacgttctgaccatagttcttttgtgttttccttgttttagtgttggtcaggatgtgagctgggtgggcattctatgttgtgtgtctggtttgtctatttctatgtttggcctgatatggttctcaatcagaggcaggtgttagtcattgtctctgattgggaaccatatttaggtagcctgttttgtgttgggtttttgtgggtg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1587746 lncRNA downstream 17126 55142909 ~ 55143242 (-) True G1390242
TU1587745 lncRNA downstream 17879 55142208 ~ 55142489 (-) True G1390241
TU1587744 lncRNA downstream 19945 55140080 ~ 55140423 (-) True G1390240
TU1587702 lncRNA downstream 87654 55072364 ~ 55072714 (-) True G1390199
TU1587504 lncRNA downstream 190074 54970033 ~ 54970294 (-) True G1390017
TU1587779 lncRNA upstream 1873 55162523 ~ 55162868 (-) True G1390253
TU1587781 lncRNA upstream 6129 55166779 ~ 55168038 (-) True sema3b
TU1587833 lncRNA upstream 109541 55270191 ~ 55270431 (-) True G1390301
TU1587835 lncRNA upstream 114931 55275581 ~ 55275802 (-) True G1390303
TU1587844 lncRNA upstream 128061 55288711 ~ 55288981 (-) True G1390312
XM_036947320.1 mRNA downstream 202379 54955862 ~ 54957989 (-) False si:dkey-20d21.12
XM_036947321.1 mRNA downstream 202379 54955862 ~ 54957989 (-) False si:dkey-20d21.12
LOC110491107 mRNA downstream 519654 54639471 ~ 54640714 (-) True LOC110491107
XM_036945787.1 mRNA downstream 524492 54635385 ~ 54635876 (-) True LOC118936330
XM_021566517.2 mRNA downstream 704352 54280345 ~ 54456016 (-) False LOC110492306
XM_036947324.1 mRNA upstream 6113 55166763 ~ 55209300 (-) False sema3b
XM_036947323.1 mRNA upstream 6113 55166763 ~ 55255351 (-) False sema3b
XM_036947325.1 mRNA upstream 6113 55166763 ~ 55255352 (-) False sema3b
XM_021566550.2 mRNA upstream 189494 55350144 ~ 55372295 (-) True actr8
XM_021566552.2 mRNA upstream 215085 55375735 ~ 55383019 (-) False LOC110492331
TU1587517 other downstream 174105 54984818 ~ 54986263 (-) True G1390030
TU1587231 other downstream 615125 54544728 ~ 54545243 (-) True G1389763
TU1585952 other downstream 1427453 53730337 ~ 53732915 (-) True LOC110492299
TU1585503 other downstream 2127447 53031932 ~ 53032921 (-) True G1388236
TU1585247 other downstream 2588061 52571710 ~ 52572307 (-) True LOC110492250
TU1588497 other upstream 663509 55824159 ~ 55826631 (-) True LOC110492352
TU1589255 other upstream 903853 56064503 ~ 56064862 (-) True G1391586
TU1589295 other upstream 1064764 56225414 ~ 56226061 (-) True G1391624
TU1589358 other upstream 1120402 56281052 ~ 56293472 (-) True LOC110492371
TU1589476 other upstream 1263622 56424272 ~ 56437279 (-) False G1391796

Expression Profile