RNA id: TU1588480


Basic Information

Item Value
RNA id TU1588480
length 6239
lncRNA type inter_gene
GC content 0.46
exon number 2
gene id G1390888
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 55798217 ~ 55804675 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tccgtcactcctcagcaggtcaggcttggtcctgtttgtgggtgagtcccagaaagagggccaattatctacaaattctatcttttgggaggggcagaaaactgtCGTCCCCTTTGGAACTGCTCCATTGTCTATCTGTGGGGAAAAAAATGCTCCCTGTTGTCCCCTTTGGAACTGCTCCATTGTCTATCTGTGGGGTAAAAAATGCTCCCTGTCGTCCCCTTTGGACCTGCTCCATTGTCTATCTGTGGGGTAAAAAATGCTCCCTGTCGTCCCCTTTGGAACTGCTCCATTGTCTATCTGTGGGGTAAAAAATGCTCCCTGTCATCCCCTTTGGAACTGCTCCATTGTCTATCTGTGGGGTAAAAAATGCTCCCTGTCGTCCCCTTTGGAACTGATCCATTGTCTATCTGTGGGGTAAAAAATGTTCCCTGTTGTCCCCTTTGGAACTGCTCCATTGTCTATCTGTGGGGTAAAAAATGCTCCCTGTCTTCCCCTTTGGACCTGCTCCATTGTCTATCtgtggggtaaaaaaaaatgctCCCTGTCGTCCCCTTTGGAACTGCTCCATTGTCTATCTGTGGGGTAAAAAATGCTCCCTGTCGTCCCCTTTGGAACTGCTCCATTGTCTATCTGTGGGGTAAAAAATGCTCCCTGTCGTCCCCTTTGGACCTGCTCCATTGTCTATCtgtggggtaaaaaaaaatgctCCCTGTCGTCCCCTTTGGAACTGCTCCATTGTCTATCTGTGGGGTAAAAAATGCTCCCTGTCGTCCCCTTTGGAACTGCTCCATTGTCTATCTGTGGGGTAAAAAATGCTACCTGTCGTCCCCTTTGGAACTGCTCCATTGTCTATCTGTGGGGTAAAAAATGCTCCCTGTCGTCCCCTTTGGAACTGCTCCATTGTCTATCTGTGGGGTAAAAAATGCTCCCTGTCGTCCCCTTTGGAACTGCTCCATTGTCTCTCTGTGGGGTAAAAAATGCTCCCTGTCGTCCCCTTTGGACCTGCTCCATTGTCTATCTGTGGGGAAAAAATGCTCCCTGTTGTCCCCTTTGGACCTGCTCCATTGTCTATCTGTGGGGTAAAAAATGCTCCCTGTCATCCCCTTTGGAACTGCTCCATTGTCTATCTGTGGGGTAAAAAATGCTCCCTGTCGTCCCCTTTGGAACTGCTCCATTGTCTATCTGTGGGGTAAAAAATGCTCCCTGTCGTCCCCTTTGGAACTGCTCCATTGTCTATCTGTGGGGTAAAAAATGCTCCCTGTCGTCCCCTTTGGAACTGCTCCATTGTCTATCTGTGGGGTAAAAAATGCTCCCTGTCGTCCCCTTTGGACCTGCTCCATTGTCTATCTGTGGGGAAAAAAATGCTCCCTGTTGTCCCCTTTGGACCTGCTCCATTGTCTATCTGTGGGGTAAAAAATGCTCCCTGTCGTCCCCTTTGGATCTGGCTGAAAGCCTTGTACAGTAAAGGATCACTGGATGTTTATCATGCTGTAATAACCATTTATTTGACTTGTGGTTCTACGGCTGCAAAGGtcataatacttcctgttgaacAACTAGTTAACCATCGTTTTTGGTTCTGAGGTTGTTCCTTGTGTGTTCTGAGAAGATATACATGTGATTGCACTTGTTCCTCTCCACCGTAGATCAGTCCTCTGGGATAATTGTGAGGGCTTGTTAATGCATCTGATCATAATTTAGACACTTTATTGGGTTGGGTTCATCCAAGTCAGACTCGGTGTCTGCAAATGCCTGTAAATCCTGTGCTGAGACAGATGTATGGCTGGCTGTGCCCTCCTGCCACTCCTGTGTGGTGAGTGTATTTACAGATGGAGTTGCCCTATGATGCTGCCAGCTGTACAATAACCATTCAATCAATCATATCTCCGTTATTCTCCTCCTTCGACAGGTTCCAAACCTGCTGGGGCAGACTAGCACTGCTGTGTTTATCTCTATAACAAAAAAGCTGTGGAGTAATACCACCTTGTGGCATAATGGTGTACTGCACCTCTTTAATCTAGATAGCACATACAATAAAGAGGAACTTGAAAGTCTTACACAGAACATTGTCCCTAAATATACAGTGTGTTTTTGTGATATTTGACAGCAAATGCCTGCTTGTGGCAtctagatgtttttttttacaacataTCCTTGAATGAATCTTGAACAAAGCTTGATTGCATTATAAAAACGGCACAAGTAAAACCACCAATTTTACTTGTGATGAAGTATAAAAAAGGACTAACACAATCAAACAGCCCAATGTCTTCAGACAGGTCTGTTGTAGTAACCATTCAATAAGAGTGGTCCATTGGTCCATCATCATCTGTGCTGCTATGAAATCCCAAAATGCACAGCAccatgatatacagtgcattcggaaagtattcataccccttggctttttccaccttttgttatgttacaaccttattctacatttgattaaataaaacattttcctcttcaatctacacacaataccccatcatgacaaagagaaaaacgttttttagaaatgttttttttttttaacaaataccttatttacataagtattccgaacttttgcgatgagactcgaaattgagttcaggtgcatcctgtttccattgatcatccttgagatgtttctacaacttgattagagtccacctgtggaaaattcaattgattggacatgatttggaaaggcacacaccagtctatataaagtcccacagttgacagtgcacgtcagagcaaaaaccaaagccatgaggtcaaaggaatcgTCTGTAGAGcgccgagataggattgtgttgagctacagatctggggaagggtaccaacatttggaggagagagtcagaaggagaggagagagtcagaacagGGGTTTACTATGCTGCTCAAGTAAGTGTAATATGGCCCTCTCCTTAGCACCATATTGTTTAAATTAAAACTTGTACAAGTCACTGAGTATTTATACTGCTGGTATATAATATTATTGCACTACCTTCATCCCAACCTTAaccactacatgaccaaaagtatatggacacctgcttgtcgaacatctcattccaaaatcatgggcattaatatggagtttgttcACCCTTttctgctgtaacagcctccgctcttctgggaagactttacactagatgttggaacattgctgcagggacttgcttccattcagccacgagcattagtgaggtcggggactgatgttgggagattaggcctggctcgcagtcggcgttctaattcatcccagaagtgttcgatggggttgatgtcagggctctgtgcaggccagtcaagttctcccacaccgatctcgacaaaccatttctgtatggacctcactttgtgtacgggggcattgtcatgctgaaacaggaaagggccttccccaaactgttgccacaaagttggaagcacagaattgtctagaattgtctagaattgtctagaagatgaatgtgcaagtagagatactggggtgcaaaagagtaagataattaaataaatacagtatgtggatgaggtagttggatgggctatattacagatgggctatgcacgggtgcagtgatctgtgggagatatgagtctccagtgattttttatatattttttaacattttgtttTCTTTCAGTTTGTTCCAGtaatgggcagcagagaactggaaggaaaggcggccaaagtagggattggctttgggggtgaccagtgagacatacctgctggagtgcgtgctacgggtgggtgctgctatggtgaccagtgagctaagataaggcgGGGCTCCAGGCGGGACCTGGAGcctgtgggtttggcgacgagtatgacgcgagggccagccaacgagagcgtaaaggtcgcagtggtgggtagtatatggggctttggtgacaaaacggatggcactgtgatagactgcatccaatttgttgagtagggtattggaggctattttgtaaatgacatcaccgaagttgaggatcggtaggatggtcagttttacgagggtatgtttggcagcatgagtgaaggatgctttgttgcaaaataggaatccgattctagatttcattttgaattggagatgcttaatgtgagtctggaaggagagtttagtctaaccagacacctaggtatttgtagtgcTGGACGggagggcaggtgcgggcagcgatcggttgaagagcatacatttagtttaccttgcatttaagagcagttggaggccacggaaggagagttgtatggcattgaagcttgtctggaggttagttaacagtgtccaaagaagggccagaagtatacagaatggtgtcgtctgcgtagaggcggatcagagaatcaccagcagcaagaattgaaccctgtggcacccccatagagagtgccagaggtccgaacaacaggccatccgatttcacacactgaactctatctgagaagtagtttgtgaaccaggcgaggcaatcatttgagaaaccaaggctgttgagtctgccgataagaatgtggtgattgacagagtcgaaagccttggccagatcgataaacacggctgcacagtaatgtctcttatcgatggcggttatgatattgtttaggaccttgagcgagACTgcggtgcacccatgaccagctctgaaaccagattgcatagcggagaaggtacagtgggatttgaaatggtcggtaaatctgtttgttaacttggctttcaaagaccttagaaaggcagggtaggatagagataggtctgtagcagtttgggtctagagtatctccccctttgaagagggggatgaccgcggcattTTTCCAATCTCAGAAAATACGATCTCAGAaaatacgaaagaggttgaacaggctagtaataggggttgcaacaatttcggcagatcattttagaaagagagagtccagattgtctagcccggctgaatTGTAAggttccagattttgcagctctttcagaacatcagctatttgggtgaaggagaaatgggggaggcttgggcgagttgctgtggggggtggagggctgttgatcggggtagCCAGGTTGAAAGCAtaggccagccgtagaaaaatgcttattgacattctcaattatagtggatttatcggtggtgacaatgtttcctagcctcagtgcagtgggctgttgggaggaggtgctcttattctccatggacttcagtgtcccagaacttttttgagttagtactacaggatgcaaatttctgtttgaaaaagctagccttagctttcctaactgcttgtgtatattggttcctaacttccttgaaaagttgcatatcacgggggctattcgatgctaatgcagtacgccacaggatgtttttgtgctggtcaagggcagacaggtctggagagaaccaagggctatatctgttcctggttctgaatttcttgaacggggcatgcttatttaagatggtgaggaaggcacttttaaagaataaccaggcatcctctactgacgggatgaggtcaatatccttccaggatacccgggccaggtagattagaaaggcctgccccctgaagtgttttagggagcgtttgacagtgatggtcgtttgaccgcagacccattacggatgcaggcaatgaggcagtgatcgctgagatcttggttgaaaacagcagaggtgtatttagagggcaagttggttaggatgatatctatgagggtgcccgtgtttacggatttggagttgtacctggaaggttcattgataatttgtgtgagattgagggcatcaagcttagattgtaggatggccggggtgttaagcatgtcccagtttaggtcacctagcagcaagAGCtatgaagatagatggggggcaatcaattcgcaTATGGTGTCCAGTGCACAACTGGGGGCAGGgggggtctatagcaagcggcaatggtgagaaATTTGTTTCttgaaaggtggatttttaaaagtagaagctcaaaatgtttgggtacagacctggatagtaagacagacctctgcaggctatctctgcagtagattgcaacaccgccccgtttggcagttctatcttgtcggaaaatatTACTAgctagggatggaaatttcagggtttttggtggtcttcctcagccaggattcagacacagctaggacatccaggttggcagagtgtgctaaagcagggaataaaacaaacttagggaggag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1588466 lncRNA downstream 16336 55781529 ~ 55781881 (-) True G1390876
TU1588467 lncRNA downstream 16817 55781246 ~ 55781400 (-) True G1390877
TU1588463 lncRNA downstream 21135 55776153 ~ 55777082 (-) True G1390873
TU1588453 lncRNA downstream 50728 55747048 ~ 55747489 (-) True G1390863
TU1588452 lncRNA downstream 51702 55746277 ~ 55746515 (-) True G1390862
TU1588491 lncRNA upstream 6970 55811645 ~ 55813087 (-) True G1390893
TU1588498 lncRNA upstream 40006 55844681 ~ 55847435 (-) True LOC110492353
TU1588512 lncRNA upstream 43485 55848160 ~ 55848387 (-) True G1390914
TU1588703 lncRNA upstream 108962 55913637 ~ 55915767 (-) True G1391086
TU1588718 lncRNA upstream 125331 55930006 ~ 55933691 (-) True G1391097
XM_021566585.2 mRNA downstream 10478 55783808 ~ 55787739 (-) True LOC110492348
XM_021566584.2 mRNA downstream 29188 55755130 ~ 55769029 (-) True LOC110492346
XM_021566582.2 mRNA downstream 52734 55742268 ~ 55745483 (-) False LOC110492344
NM_001129988.2 mRNA downstream 105405 55672785 ~ 55692812 (-) True LOC100170209
XM_021564388.2 mRNA downstream 118599 55671464 ~ 55679618 (-) False LOC100170209
XM_021566592.2 mRNA upstream 19480 55824155 ~ 55826646 (-) False LOC110492352
XM_021566593.2 mRNA upstream 40010 55844685 ~ 55847496 (-) False LOC110492353
XM_036947334.1 mRNA upstream 80708 55885383 ~ 55888359 (-) True LOC110492354
XM_036947337.1 mRNA upstream 91511 55896186 ~ 55908027 (-) False LOC110492355
XM_021566595.2 mRNA upstream 91511 55896186 ~ 55908039 (-) False LOC110492355
TU1587517 other downstream 811954 54984818 ~ 54986263 (-) True G1390030
TU1587231 other downstream 1252974 54544728 ~ 54545243 (-) True G1389763
TU1585952 other downstream 2065302 53730337 ~ 53732915 (-) True LOC110492299
TU1585503 other downstream 2765296 53031932 ~ 53032921 (-) True G1388236
TU1585247 other downstream 3225910 52571710 ~ 52572307 (-) True LOC110492250
TU1588497 other upstream 19484 55824159 ~ 55826631 (-) True LOC110492352
TU1589255 other upstream 259828 56064503 ~ 56064862 (-) True G1391586
TU1589295 other upstream 420739 56225414 ~ 56226061 (-) True G1391624
TU1589358 other upstream 476377 56281052 ~ 56293472 (-) True LOC110492371
TU1589476 other upstream 619597 56424272 ~ 56437279 (-) False G1391796

Expression Profile