RNA id: TU1589478


Basic Information

Item Value
RNA id TU1589478
length 2875
lncRNA type read_through
GC content 0.40
exon number 6
gene id G1391796
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 56424272 ~ 56437279 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACCAAGCCACAACTTTATTTCCATCTCGGGTATAaattgtacaaacaatagtagatTAAACCAGCAAACTTTCAGAACCCCCTTCGACCAGCAGCCTACATCGTCAATTCCATAATAGCATTGACAATatcattgttgttgtttttaaggGCGCGTACAGCCTTCGCTCGCGACACGTTGGCTTGTGACATCACGAGTTCAATGTCCTTCACCTCAACCCCTGTCTCGTCAACctcttcctctTCGCTCTCCTCTTGTACAGTGGGAGTCTGTGTGTTTTCCTGGACGTTCGACACAGCTTCTCCCTGTACCTTGAACTTCTCTGCCGCGGCAAGCTGGGCTTGTTGTGAAAGATCCTCGATCTTAGCCTCACCAAAGACAATGTACGTGTCTGATGCAGGGCTCTTGTAGACGTCTGGTTTGGTGATAACGAAAAGGATATTTTTAGACTTGCGAATGGTAACCCTGGTGACCCCCGTCACCTGCCTGAGACCCAGCTTAGACATTGCCTTTCGTGCCTTCTTTTCACTACGGCTCTGTTTGGCTTTGCTAACGGGTTCTTCATCTATTTCTGCAGCAGCTGCAAGCTGCGCTTGCTGTGTCTGTGCAGAGTCATGTTCCTCCAGATCTGGTACAGACTCATCACTGTCTGATTCAGTGCCAGACCCTGTAAGCCACCCCCAGAGAAACAAGCATTATTCATGTGGTCACTGGCACGAGCTGCAGAAAACCAGTTCTTCTATAGTAGCCTTTGTAAGAGAATTGTAATTGTATAGGTATTTAACAGAGCAAAGTCTATGAGGCACAACAGAGACTGATACAAATCGAGATGTTGAATGAGCACAACATTGGTTGGTGGTAGGTGAATCTAACCTATTCATTTGTGGCAGTGAAACAGAATAAAAATGGGTATATGTGGATGAGGTTAACAAAAACGTCAGTGTAGAAATTAAGACCAGCTTAGAAatgtgaaatcaaatcaaatttatttatatagcccttcgtatcTGGAGTAGTAAAATCTTGCACATCCTTTGCATATGGATTTGAAAAGTAATCTCCCAACTTGACAAATCTGTATCACAATGACATAGAACTGCCACCCCCCTTGCCATTCCCCTCAAAAGTACTTTTATAGGCTGACAGAAATAgagcaccttcagaaagtattcacaccccatgaCTTGCCAACATTTTGTTAGACAATTTAAAAAAGGGATTAAATTGATTTTATCGAAGGCTTAATACACCATTTCAAAACGGAAGTCTGAAACATCTTAAATAGTCAagccttttgttatggcaagcctaaataagttcaggagtaaaaacgtGCTTAACAAgccacataagttgcatggactgtgtgcaatagtgtttaacacaAATTtcgaatgactacctcatctctgtatcccataCATACAATTGTatggtccctcagtcgagtagcGAATTTCAAATACAGAGTCAACCCCAAAAACCAGGGAGGTATTCCAATGCCTAGCAAAAGGGCAActaaaaaaagtataatttaaAAGCAGACACTAAATATCCCGTTGAGCAAGGTGAAGTCATTaattatcaatacacccagttaccacaaagatacaggcattctTCCTAAtgcagttgccagagaggaaggaaaccacccagggatttcaccatgaggccaatgttgactttcaaacagttagagtttaatggcttacaggagaaaactgaggatggatcaatattgtagttactccacaatactaacctaattgacagactgaaaaggaagcctgtacagaattaaaaacatattccaaaacaaacatcctgtttgcaacaaggcactaaagtaataccgcAAAAAACAATGAATGTTTTGTCCGGAATAGTGTTATGCTTGGGGTAAATACAATACAACGCATTAAtgagtaccactccatattttcaagcctagtggtggctgtatcatgttatgggtatgcttgtaatcgttaaggactgtggAGTTTCAGGATTTAAAAAAAGAACGAGCTAagcagacaaaatcctagaggaaaacctggttcagtctgcattcCACCAGACATTTGGAGAGTTcaactttcagcaggaaaataacctaaaactcaAGGCCAAATGTTCGAGTGGCAGAGTTAGTTTTTCCTTAAATCTACTTGATTTTCTAGCAATGCTCAAGAACCAATTTCACAGAGCTTGAAgacttttgaaaataataaaatgggCATATGTTAAAcaggtgtggaaagcttttaaagacttacccagataCAGCTGTGTGCCTAAGGTGCTTACtcgtgaatacttatgtaaatgagatctgCATTTAAtttaatagatttgcaaaaaaattatgttttcactttgacattagtgTGTAGATGGGTGCAAAAGTGTATTTCTAAAATCCATTTTGAAGttaggctgtaacaaaatgtggaataagtccaggggtatgaatactttgaaggcactgtaatagGGCTCCTCATTTCACTATAATTGAGAGACCCCCCCAGAAAAAAACAGTATATAAAAGCAGGGCATTTACATAATTTGAACCTTATCTTGGGAGGAAAAACACTGGAATGTCTTGTTTGAAAGTACAGTAAAAATGTACCCCAAATAATAAAAATGGCACTCAAATGGGAGCCCCGATTTCTCCAATCAATAGCTCCAATAACTACACGTGATCTTTGAAACAGGCCAGTTCAGAGGTTACATTTGAGGAAAAGCTAATACAGACTACTACAATCTCTACTTTCTTTAGCTTAAACCTTAAAAAGGGAAAAGAGACTTGAACGGGCCACAGAAATAAACACTGGTGGGCAAACagaggggacacagacagacaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1589394 lncRNA downstream 81144 56350987 ~ 56351987 (-) True G1391721
TU1589431 lncRNA downstream 83367 56349540 ~ 56349764 (-) True G1391755
TU1589422 lncRNA downstream 99657 56333155 ~ 56333474 (-) True G1391746
TU1589357 lncRNA downstream 189145 56240774 ~ 56243986 (-) False LOC110492371
TU1589365 lncRNA downstream 192461 56240316 ~ 56240670 (-) True G1391693
TU1589483 lncRNA upstream 18865 56456144 ~ 56456559 (-) True G1391799
TU1589510 lncRNA upstream 21862 56459141 ~ 56459352 (-) True G1391826
TU1589486 lncRNA upstream 34452 56471731 ~ 56473616 (-) True G1391802
TU1589525 lncRNA upstream 51393 56488672 ~ 56489237 (-) True G1391839
TU1589632 lncRNA upstream 263986 56701265 ~ 56701492 (-) True G1391942
XM_036947350.1 mRNA downstream 73163 56352467 ~ 56359968 (-) True LOC110491119
LOC110491118 mRNA downstream 94591 56322691 ~ 56338540 (-) True LOC110491118
XM_036947347.1 mRNA downstream 139628 56240763 ~ 56293503 (-) False LOC110492371
XM_036947348.1 mRNA downstream 150609 56240763 ~ 56282522 (-) False LOC110492371
XM_021566622.2 mRNA downstream 196226 56231265 ~ 56236905 (-) True LOC110492367
XM_021566639.2 mRNA upstream 106363 56543642 ~ 56563898 (-) True LOC110492378
XM_036947353.1 mRNA upstream 132846 56570125 ~ 56679900 (-) False LOC110492379
XM_036947354.1 mRNA upstream 132846 56570125 ~ 56679900 (-) False LOC110492379
XM_036947355.1 mRNA upstream 132846 56570125 ~ 56679900 (-) True LOC110492379
XM_021566643.2 mRNA upstream 276503 56713782 ~ 56728738 (-) False LOC110492380
TU1589358 other downstream 139659 56281052 ~ 56293472 (-) True LOC110492371
TU1589295 other downstream 207070 56225414 ~ 56226061 (-) True G1391624
TU1589255 other downstream 368269 56064503 ~ 56064862 (-) True G1391586
TU1588497 other downstream 606500 55824159 ~ 55826631 (-) True LOC110492352
TU1587517 other downstream 1446868 54984818 ~ 54986263 (-) True G1390030
TU1589557 other upstream 101313 56538592 ~ 56540929 (-) True G1391869
TU1591593 other upstream 1412395 57849674 ~ 57853786 (-) True LOC110492394
TU1591622 other upstream 1450212 57887491 ~ 57893282 (-) True LOC110492397
TU1591827 other upstream 1767480 58204759 ~ 58207165 (-) False G1393949
TU1591828 other upstream 1767480 58204759 ~ 58207165 (-) True G1393949

Expression Profile