RNA id: TU1591796


Basic Information

Item Value
RNA id TU1591796
length 784
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G1393929
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 58168843 ~ 58169626 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ccaggacacctacaccacccgatgtcacaggaaggccataaagatcatcaaggacaacaaccacccgagccactgcctgttcaccccgctatcatccagaaggcgaggtcagtacaggtgcatcaaagcagggaccgagagactgaaaaacagcttctatctcaaggccatcagactgttaaacagccaccactaacattgagtggctgctgccaacacactgactcaactccagacactttaataatgggaattgatgggaaatgatgtaaaatatatcactagccactttaaacaatgctacctaatataatgtttacataccctacattattcatctcatatgtatacgtatatactgtactctatatcatctactgcatctttatgcaatacatgtatcactagccactttaactatgccactttgtttacatactcatctcatatgtatatactgtactcaataccatctactgtatcttgcctatgccgctctgtaccatcactcattcatacatctttatgtacatattctttatccccatACACTTGTgtctgtctataaggtagtagttttggaattgttagctagattacttgttggttattactgcattgtcggaactagaagcacaagcatttcgctacactcgcattaacatctgctaaccatgtgtatgtgacaaataacatttgatttgatttgatttgggtatGGTACATTAAAAAAggcccccagtgtccggtctggagcgtgaagtcGGCTAGTGTGTAGCAACCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1591756 lncRNA downstream 6815 58161696 ~ 58162028 (-) True LOC110491122
TU1591787 lncRNA downstream 18949 58149598 ~ 58149894 (-) True G1393920
TU1591785 lncRNA downstream 22783 58145701 ~ 58146060 (-) True G1393918
TU1591784 lncRNA downstream 25865 58142770 ~ 58142978 (-) True G1393917
TU1591783 lncRNA downstream 26488 58142135 ~ 58142355 (-) True G1393916
TU1591818 lncRNA upstream 22118 58191744 ~ 58195357 (-) True G1393945
TU1591822 lncRNA upstream 28893 58198519 ~ 58198778 (-) True G1393947
TU1591845 lncRNA upstream 42899 58212525 ~ 58212737 (-) True G1393955
TU1591873 lncRNA upstream 80516 58250142 ~ 58250445 (-) True G1393979
TU1591877 lncRNA upstream 85216 58254842 ~ 58255061 (-) True G1393983
XM_036947379.1 mRNA downstream 6763 58105100 ~ 58162080 (-) False LOC110491122
XM_021566691.2 mRNA downstream 71107 58093542 ~ 58097736 (-) True LOC110492403
LOC118939560 mRNA downstream 90410 58073907 ~ 58078433 (-) True LOC118939560
XM_036947378.1 mRNA downstream 98092 58070188 ~ 58070751 (-) True LOC118939561
XM_021566689.2 mRNA downstream 168592 57965807 ~ 58000251 (-) True LOC110492401
NM_001124456.1 mRNA upstream 59435 58229061 ~ 58235899 (-) True LOC100136178
XM_021566703.2 mRNA upstream 132885 58302511 ~ 58315631 (-) False LOC110492410
XM_021566701.2 mRNA upstream 132885 58302511 ~ 58315640 (-) False LOC110492410
XM_021566702.2 mRNA upstream 132885 58302511 ~ 58315644 (-) False LOC110492410
XM_036947386.1 mRNA upstream 197093 58366719 ~ 58393232 (-) False LOC110492413
TU1591622 other downstream 275561 57887491 ~ 57893282 (-) True LOC110492397
TU1591593 other downstream 315057 57849674 ~ 57853786 (-) True LOC110492394
TU1589557 other downstream 1627914 56538592 ~ 56540929 (-) True G1391869
TU1589476 other downstream 1731564 56424272 ~ 56437279 (-) False G1391796
TU1591827 other upstream 35133 58204759 ~ 58207165 (-) False G1393949
TU1591828 other upstream 35133 58204759 ~ 58207165 (-) True G1393949
TU1591894 other upstream 104402 58274028 ~ 58278427 (-) True G1393997
TU1591868 other upstream 132885 58302511 ~ 58306641 (-) True LOC110492410
TU1591975 other upstream 254832 58424458 ~ 58428113 (-) True G1394067

Expression Profile