RNA id: TU1591818


Basic Information

Item Value
RNA id TU1591818
length 2989
lncRNA type antisense_over
GC content 0.41
exon number 2
gene id G1393945
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 58191744 ~ 58195357 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTACATTGATAAGATAATAAATATCTTAAATAGAGATTTGATATGGGGAAGGGGTATATAATTAACTTTTAGGCTCTGGCTGATATCATGTGACTCATGCCGGTGAAGAACGACCGCTCTCTCTCAGTCATCAGCTCAAAGTGGAGAGGCTGCTGGCAGAAGTTACACTCCCCTGACGAGTGAGGTTTTAGCTCCAGACCCACCTCCTTCCAGGCCTTCACCAGACGTTCTGTGGCCAGGAACACATTCACATGTAATGGATCACATTTTAGTTGtactttattaaaaaaaaataacatacaAGAAACACTATAGCAGATTCTTACTTGAGTTCTGAATGCAGTCAGCATGGACAGATTTATCCCACCAAATGGAGGCCATTTTAGCAACATTGAATAAGTTAAAATCATACAAATCCAAAACTATTACATGCTAAAAACCACAAAATCTCATTGGGGCGTGTGCTTACCGACAAAGTActgcatcatctggggagtgtggtgtggggtgggggCGATGCGGAGGACCTCCTCTCCCTGAGCCACAGTGGGGTAGTTGATGGCCTGCACATAGATGTAGTAGCGAGACATCATGATGTCACACACCTCTGTGTTCTTGGCTGCGTCCGCCACCTGCAACAAGGGGTCAAAGATGAATCCTCAGGTGATAAATTAGAAAACATTTTAAGCATGAAATATAACAGCCACTGTTGATAGAATGTCCCTTCTCTTGTTTCCATGGTTTAAAACTtgattaacttcttggtgacaggggggcagtattgagtagcttggatgaataaggtgcccagagtaaactgcctgctactctgtcccagatgctaatatatgcatattattagtagtattggatataaaacactgacgtttctaaaactgtttgaatgatgtctgtgagtataacatgagtataacagaactcatatggcaggcaaaaatccaaccaggaagtgggaaatctgaggcttgtagttttttaactcagcccctattgtagatacagtgggatggatattggttatgttgcacttcttaaggattccactagatgtcgacagtctttagaactttgtttgaggcttctactgtgacgTGGCACCGAATGAAAGgaatgagccaggtgtctggcagagtgccacaggctctgaggcacggtcacgagagagttggctcttgttccattgcttttctacagacacaggaattctccggttggaacattattgaagatttatgatgaaaacatcctaaagattgattctatacttagtttgacaagtttctacgggctgtaacggaacaTTTTGAACTTTTTGTCCGAAGTTCGGCgcgacctgaacgcgcttttggatttgtttaccaaacgccttaacaaaagaagctatttggacataaatggacattatcgaacaaaacaaacatttattgtggaactgcgattcctgggagtgcattctgatgaagatcaaaggtaagtgaatatttatggtgttctctctaacttctgttgactccaaaatggcggatatttctctggctggatcGTGCTATGagtgccgttctcagattatgctttttccgtaaagtttttttgaaatctgacacagtggttgcattaaggagaagtctgtctttaattctgtgaataacaattgtatcttttatcaatgtttattatgagtatttctgcaaaatcaccggatgttttggaatcaaaacattactgcacgtaatgcaccaatgtaaactgagatttttggatataaatatcacattatcgaacaaaacatacatgtattgtgtaacatgatgtcctatgagtgtcatctgatgaagatcatcaaaggttagtgattcattttatctatatttctgctttttgtgactcctatctttggctggaaaaatggctgtgtgtttttctgACTTGGCAAGGACTTAAGCAGAACATATGATTATTTTTTGAAATCCGACACGATTGGTAGATTAACacgatgtttatctttcatttgctgtatttgacttgttaatgtgtgaaagttacatatttctaaaaaaatatttttgaatttcgcgcactaccttttcagcggaatgttgtcgatcAGTTCCACTAGCGGAAcacctgcgctagaaaggttatggataagtatatctctaattcaaTGTATAACAtgtgtattttcatcaacatctatgagtatttctgtaaatagatgtggctctctgcacaatcactgcatgttttagaactactgaacgtaacgcgccaatgtaaaatgagattttttttaatataaatatgcactttatcgaacaaaacatacatgtattgtgtaacatgatgtcctatgagtgtcatctgatgaagatcaaaggtttgtgattaattttctctctatttgtgctttttgtgactcctctctttggctggaaaaatggctgtgtttttctgtgagttggtggtgacctaacaatcgtttgtggtgctttcgctgtaaagcatttttgaaatcagacactgtcgctggattaacgagaattgtatcttttaaaatggtgtaaaatacttgtatgcttgaggaatttgaattatgagatttttgttttgaatttggcgccctgcactttcactggctgttggcgaggtgggacgctgccgtcccacatatcccagagaggttttaacagGCCTGTCTTACACGGACAGGGATGATGTGGCTGGGGCAGTAGACAACGGGCAGGCCCGAATCCATCAGCATCTGGCGAAGCAGCTTGACGTTCCTCTGGTGTTTCCTGCGCAGCACACGGCCCTCCTCCCCCTTCAGGGTGTGGATGGACTCCCGGGCCCCAGCCAGCAGCATGGGTGGCAGGGAGGTAGTGAAAATGAAGCCTGCTGCGTAGGAGCGCACCGTGTCCACCAGGGCATTGGTACCAGCGATGTAGCCGCCCACACAGCCAAATGCCTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1591796 lncRNA downstream 22118 58168843 ~ 58169626 (-) True G1393929
TU1591756 lncRNA downstream 29716 58161696 ~ 58162028 (-) True LOC110491122
TU1591787 lncRNA downstream 41850 58149598 ~ 58149894 (-) True G1393920
TU1591785 lncRNA downstream 45684 58145701 ~ 58146060 (-) True G1393918
TU1591784 lncRNA downstream 48766 58142770 ~ 58142978 (-) True G1393917
TU1591822 lncRNA upstream 3162 58198519 ~ 58198778 (-) True G1393947
TU1591845 lncRNA upstream 17168 58212525 ~ 58212737 (-) True G1393955
TU1591873 lncRNA upstream 54785 58250142 ~ 58250445 (-) True G1393979
TU1591877 lncRNA upstream 59485 58254842 ~ 58255061 (-) True G1393983
TU1591889 lncRNA upstream 72422 58267779 ~ 58268135 (-) True G1393995
XM_036947379.1 mRNA downstream 29664 58105100 ~ 58162080 (-) False LOC110491122
XM_021566691.2 mRNA downstream 94008 58093542 ~ 58097736 (-) True LOC110492403
LOC118939560 mRNA downstream 113311 58073907 ~ 58078433 (-) True LOC118939560
XM_036947378.1 mRNA downstream 120993 58070188 ~ 58070751 (-) True LOC118939561
XM_021566689.2 mRNA downstream 191493 57965807 ~ 58000251 (-) True LOC110492401
NM_001124456.1 mRNA upstream 33704 58229061 ~ 58235899 (-) True LOC100136178
XM_021566703.2 mRNA upstream 107154 58302511 ~ 58315631 (-) False LOC110492410
XM_021566701.2 mRNA upstream 107154 58302511 ~ 58315640 (-) False LOC110492410
XM_021566702.2 mRNA upstream 107154 58302511 ~ 58315644 (-) False LOC110492410
XM_036947386.1 mRNA upstream 171362 58366719 ~ 58393232 (-) False LOC110492413
TU1591622 other downstream 298462 57887491 ~ 57893282 (-) True LOC110492397
TU1591593 other downstream 337958 57849674 ~ 57853786 (-) True LOC110492394
TU1589557 other downstream 1650815 56538592 ~ 56540929 (-) True G1391869
TU1589476 other downstream 1754465 56424272 ~ 56437279 (-) False G1391796
TU1591827 other upstream 9402 58204759 ~ 58207165 (-) False G1393949
TU1591828 other upstream 9402 58204759 ~ 58207165 (-) True G1393949
TU1591894 other upstream 78671 58274028 ~ 58278427 (-) True G1393997
TU1591868 other upstream 107154 58302511 ~ 58306641 (-) True LOC110492410
TU1591975 other upstream 229101 58424458 ~ 58428113 (-) True G1394067

Expression Profile