RNA id: TU1592679


Basic Information

Item Value
RNA id TU1592679
length 5895
lncRNA type antisense_over
GC content 0.42
exon number 2
gene id G1394696
representative False

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 58982821 ~ 58988799 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTCACATTTATTGTCTTTATCCAGTATGACTACCTTTACACAGACATACCACTTCTCTATAGGAAAACAAAACTTCATAGGATTAGTTCAGCAGTATTACATTAGACTAAACTCAGTTATTTCATCATTTCATTTTTTCACTTTTTCAACATCTTCAAAGTTATAGGTTTGTTTTCGATTCTGTGTAAAGGTTCCCATGACTGATGAACATGCATATGACATTAAATTGTAATGAATATGCCACTAATCATAATGCACATTATTGAGAAGAATACCATACTGCATAACAATTCAAATACATACCAACATACAgatgaagttgttatttcatatAAAGGTATCAAACTCAATATGGATCAATACTGAAACACAATATGACAATATAAAGTTTACACAGCTAGTGTATTATCACAGTGCTATTGCTTCCAGCAAACAGAAAACGTTTATTTTCCTTGTAAAACAGCATTAAAATGGCACTTTATTTTCTTCTTTTGTTTTTGCTTCCCAACCGTATTGATAACTTTTTACGCCTCAACAAACAAGCATTGGCAATAATGGCACAATTCAAGCTTGTTGATGCAAAATCTGTTTTCTGTTTCCTGAAATCACAACGCTTGAATAAGATGTAAAAAAAAGATTCAAGAATAAAAAATAAGATTTAAAaactcaaaatggacaaacaaacGACAAAATGCGCTCCCTGCACATTTGCCAACAATACTATTGATAGCACATTACCTTAACCAAACAAAGTTCGAGATCACCTAGATGTTTCAATAGAACACTGATCTACCCAGAACACAGTAGTGGTGTTTGTAACATTTTGTTCAATAGGAGGCCAAAGGGATTTATTTTGGTTCCcagtttgataaaaaaaaaaaaaaattctcaatACCCCTGAATTTTCTGTTAGGATCACTGACCTGCAGAATTCAACACAATATCAATTGAATTGAGCTAATTTGAAAACTATCATCTCACCCCTGCAAAAAGGGCTCATCTTTGCATTTATTGCTGCTCACAAAGTCGGTTTAAACCCAAACCTCCACACCTAAAAAACGAACAAAAAACACTAGTCTACGATTCTCCCTTGAAACAATGAAAGGCACGACTGGTCAGAACGAAGAACAAAACAGACCCAAAACAAATCCTGGGCAGCTTTAGGACAGAAAGCCACGGCCCCAAACTATACCTTTCCCACTGATGTACGGCTTGTCTTTCTTTCTGATTCTTCATTCTTTTCAAACCTAAATGATGTACCAAGATTTGGCAcgataaacaaagagagaatgAAACAATTCCAATTTGGAATTTAATCGTTGCACTTGCAGAGAATTCTGTGAGCCAGTGATCCCTTATCAGTGTGACACCCTGGTAAGAAGCTGGAAAAACCAAAATAATTTTGTCACTCCATTTCTTCCCCCAATAACTTCTTACCATTTTTGGAATCAGAGTGTCGTCAAGTTTCTCTGCGTTATCTTTGAACTATTCCTAGGAATAATAAATACATGAAAACCCCAGAATTAGCTCACCCTGGATTTCGTTTAGAACATGGCAGCAGAACAAACATAAAATCAAACCATCAGCATAATAATAATATGAGACATAACAATAAAAGGATGCTTATTCAGTTGGACAAATTCTCAGAATCTTAACAGTAGGACTGTGGTTTGCGGTGTGGCTTTAGGAGAGTAAATGGTCTCTATGGATGATACAAAGAGACAACATATAGGAGGAAATATATTCCTATATGTGTATACTTGACTAAATAACTCAAACCATAGCACTAAACCTTTCCTAGGTTAATAATATAaagttataatactataataaaagtgcacaggttaaagaaaaaaagatatataaaaaaataaaaagatcaAAACGGTTTGTTGATTTACATTGAGGAAAGACCCCGACTCCCCTGGCTTCTCATGGGAGGGATACCTCAAATAATCACAAACTCTGATCATCATTTTACTAGGAGGGCAGAGTTCACTGTACTTGTGAGCATCGTCTTCCGGCAGCAGCACTGGGAAATGTGAAATACCTTTTCATTCCCACACATAGGacatagaggttagaggtcatatAGGTTATAGAGGCCATAgaggacatatagatcatgctaTATAGTGAGTTAAAGGGCAACTTGGAGGAATATTTCATATTCATATAAGAGATTTTGTTTGGTCGGGTTTTACAATTTTGGCCTCTAGGGCTAGCTGATTTCAGGAACACTGAATGTGACGTCGGCAGTGTTAGAGGATCCTGAGTTTGAGGATCCTCATCCGGGCAGAAttaaattaatacaaaatgaagAAACATAGAAATCAGAAAAATGTGCATTATTGGTCAATTTAGACTTGGTCAGTAATGATGCCAGTCCAATCAAAAACACGAAATAAGAAAGAGTAAAAAGATGAACGCCGAAGCCCCAGTTAGTTATAGTTGCTACTAACTACAGGTAGGTGCAAACTGGGTTAGTTATAGTTGCTACTAACTACAGGTAGGTGCAAACTGGGTTAGTTATAGTTGCTACTAACTACAGGTAGGTGCAAACTGGGTTAGTTATCAACATCATGTCAATATGTTCTAGAGGAGCTGATGTAAAAGCACTATTGCCTGAGGAAGACCAGCAAGTGCGAGAAGCCGATGACCTCACAAGTACTATGACCTTTGACACCTCCAaaacacagaccccccccccaatGGCATGCAGGTTAATGAGAACGGgcatgttttttatttgttgCATGCAGGCTCTCAACCAATCAAAAATCTAATTAAGAGCGTGTGAGAGAACTCAACATTGATGTGGGCAGAGCCTGCAGACAGAGGTAGGAGGAGTTTATTCTGGTGGCATTCTATTGATGACACCAGATAAACGGACATTGATCTCAAACTAGACCaagagaactggggggggggggggggggggggtctctctaGTCACAATCACATCCTGGATTATTAAATCTATCTATTGCTCAGTGAATCCTTAGAGCCGAAACAAGGAAAGGGGGATAGAGGGTCAACTAATTTGAATCAATGTCCACTGGTAAGATTCCACAGTTAGAGACAAAGTAGTTAAACAAAATGTATCATTTTTTTGAATCACCAAGGGTTTAGAGCACCTCAAATAACCCTGGAACCCATGTCTCCAAACACAGAATCAAATTCATGATCAGCATcgtttaaacactattattagtcctctgttctctcctagTCTCTACACTCAGCGCAAACTGATATAAACAAAGAGTGAATCTATCGCTGTCACTTAAGTGGAACAATAACCGAAGAGTGATTTTCACTCAGTGGAGGTGTATGAATGATGTGAACACAGTCTCCATACTGTGTTGTGTGTCTAAAGGCCTCGTAGGGCAGCACAGCACATACTCAACTCAAGCAGGGTTGGGGATGTCCCTCGTTCTGAGGAATGacagctctccctctctattccagAGAGAGGGGGCCTAGGAGGATCCTAGAAGATTCTAACCTGATTACAATCATATCATTAAGAATATATCGTTTTTTATATGTTACTGGTAGAAAAAGCATAATTTGATGAATCTTCAAGGATTTCCTGGTATCAACCCTGCTTTTAGCATCATAAAGCTAACAATGTGTGGTTATGTAAAACGTGGATTTATCTAACACAAGCCCCACATTTATTTTTATCTGCCTGGCACAAGCTTGCAAGGTTTAAAGCTTTTTTGGGGGGTAATGAAGACAGTATATTGGTTTGTCCTCTTGCATACAAACAGCATCTCAGAAATGAACGACCCTCCATTTATAATATTTTCAGACAACAACATACACATACAGATCACTGAgatcactctcactcacacagacacacacacagacagacacacagacacacgcagggTTCAGAACACGCATACGCGTGAGGACGTTACCTGATGATATtcagagtcccccccccccccccccccccccccacacacacaaatccccctCTCGACTTAAAGGGGGAGTGGCGTTTCAGGGCGAGCAAGCTGCTGACAatctaaaagagagagagaggggttgtcaTGACAACCAAGTGACGAGACACAGGTTAGAGTcatgaggaggaggacagggtttTCAGCCACATAACCACACATAGTTCATTTGAGAGCTCAAAAGGGCCTccaaaaagagagggaaaggagatagagggagagatgagcaTCAGGGTGATAGACACAAAGACGGGGCTTTACATCGATAGATAGATATAGTTGATATCAAGTGCTTGGGTCGACAGGCACTTTGCTGAAGGTTGTCAGTTTTGTTTGCAGAATTATGATCCGGATCTGGGTGCCATTGATTTTTGTGCTTTTTTTAGGATCTTTACTGATGTTACAAAAATCACCATCAATCAAAACTATATTGTATCTGTTCACAGTTATTTTATCCTTTTCTAATAGAAGTTAGAACCTGAGGCACCTATTCTGAAGTGCACTTAATTTAGGTGTAGAGATCGTTTCGTCTTGCTTTCGTTCTCTAGTAATATGGCTCTGAAAGAACACCAATATGACATATACTGGGTCACATGGAATAGCCCTCCATTTCTTTCAGCAGACGCTAAATAACTGCTCTGGTTAAAATGTACAGCCCTGTAGTACATAGCTTGTGCTGTGCCACACACCTTTTTACATAGAAAAAACAGTTAAAAGCTCAGTAGCATTCTCAGCTGCAATGCCATGCGATTGATCTGAATTAATCCTGAAATTAAACACCTGTGGTCTTAGGTGCTCCTTTACCACCCACCTCCGACATCACTAATCATCAGCCAACCCGCTTTGAGAGTTTTGAAATTCAGTTAGAAAACCCAGCAAATCACACTGGACTCCCCTAAGCAACAGCATGGGGAGTTTGCATATTGTTTTGTTTCATTTGTTTATGTAAACATTAAAGAGTGACCTGATTGGTCAGCGGGTTGCTGGGCTGGCTCAGTCCTGgggggccaggagagaggaggatgggaggctTTATCGAAGGAGCACCAACGCCAACAGACGAGCAACACAAGGAGAGGATGTCAGCTTCAGTCACATGACCCCTTAGTGACACCCTCTTCCCAAGTCCCCACCCCCTAAGTGCATTACAGTTACCAGGCAACACACTCAGGGGGTTCAGAACACACTAAGCACAAATGCTGCCACCTTTAACATCATCGTAAGTGCAGCACCCCATAATATCCACAGAAGCCTACCGGCAGCCGGTTGAGACCCTATCCACATGCTATACATTATGTCTACAACAGTCCCAAACTTCTAGtgcacactgtactgtacatgcacATCTGCATTCCCCTAAACATTTACACTAGCAGACGTGAGTGGCTATACGTGGCCATGGGCATACTTATGTACTGTAGGTTAGACACACACCAGGCCCTATGTGGCTACAGGCTGGGCAGGCAGGGAGCTAAGCGAGCATAGTGGGGCTCTTTAACATTAATGCAGGGGAGAGCCTCGGGCTCCTCCCCTCTGTACACAGCAGTCCCGTGCTGACAACGCAGCCGCTTCAGTCGCAGTAGATCTTGTACTTCTCGCTGCAGAAGACCACAGGGCCTCCACGGATGCAGTTGGGCATGGCGTTGAGCTCGTTGGGGCGGCCGATCCCGGCACAGGTGAGGCCGTGACTAATGCGTGGGTTGTTGGCGGCGTTGATCTGCCCGTTAGTGGTTCTGCCGTTAGTGGTTTTGGCTTTTGGTTTGCCTCCGCGGCGGGTCTGCTCGGTGTCAAACTCCAGGTCCTCCAGGCGCTGGGTCAGGGCCAGCTTCTGCTGGATGGCCATACGGAGCAGGGAGTTCAGGGTCTTCTTCTCATCCTCCGCCGCAGACAGCTGTCTCTGCATCTCATCCAGCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1592650 lncRNA downstream 47624 58933041 ~ 58935197 (-) True G1394670
TU1592635 lncRNA downstream 78248 58904325 ~ 58904573 (-) True G1394656
TU1592619 lncRNA downstream 85865 58886864 ~ 58896956 (-) False LOC110492420
TU1592620 lncRNA downstream 85865 58886864 ~ 58896956 (-) True LOC110492420
TU1592404 lncRNA downstream 102964 58879387 ~ 58879857 (-) True G1394450
TU1592702 lncRNA upstream 31038 59019837 ~ 59051938 (-) True LOC118939564
TU1592725 lncRNA upstream 52050 59040849 ~ 59079877 (-) True G1394737
TU1592766 lncRNA upstream 124655 59113454 ~ 59113981 (-) True G1394777
TU1592767 lncRNA upstream 125295 59114094 ~ 59114533 (-) True G1394778
TU1592795 lncRNA upstream 148162 59136961 ~ 59137258 (-) True G1394806
XR_002468998.2 mRNA downstream 85856 58886676 ~ 58896965 (-) False LOC110492420
XR_002468999.2 mRNA downstream 85856 58886676 ~ 58896965 (-) False LOC110492420
XR_002469000.2 mRNA downstream 85856 58886676 ~ 58896965 (-) False LOC110492420
XM_021566730.2 mRNA downstream 85862 58886676 ~ 58896959 (-) False LOC110492420
XM_036947394.1 mRNA downstream 105319 58871749 ~ 58877502 (-) True LOC118939563
XM_036947397.1 mRNA upstream 31105 59019904 ~ 59026126 (-) False LOC118939564
XR_002469001.2 mRNA upstream 187135 59175934 ~ 59206144 (-) False LOC110492425
XR_002469002.2 mRNA upstream 187135 59175934 ~ 59206144 (-) False LOC110492425
XM_036947401.1 mRNA upstream 191524 59180323 ~ 59187309 (-) False LOC110492425
XM_021566739.2 mRNA upstream 191524 59180323 ~ 59206144 (-) True LOC110492425
TU1592300 other downstream 135805 58838756 ~ 58847016 (-) True LOC110491124
TU1592280 other downstream 235522 58746870 ~ 58747299 (-) True G1394341
TU1591975 other downstream 554708 58424458 ~ 58428113 (-) True G1394067
TU1591868 other downstream 676180 58302511 ~ 58306641 (-) True LOC110492410
TU1591894 other downstream 704394 58274028 ~ 58278427 (-) True G1393997
TU1592757 other upstream 122573 59111372 ~ 59112897 (-) True G1394768
TU1593009 other upstream 365401 59354200 ~ 59356849 (-) True G1394978
TU1594716 other upstream 1565957 60554756 ~ 60582035 (-) False G1396467
TU1594714 other upstream 1568239 60557038 ~ 60582035 (-) True G1396467
TU1594786 other upstream 1672757 60661556 ~ 60663516 (-) False LOC118939463

Expression Profile