RNA id: TU1592796


Basic Information

Item Value
RNA id TU1592796
length 272
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G1394807
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 59138058 ~ 59138329 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggatagataattatttgtgttgttgtttgtttagtgttttccaattttcccagaagtagttagagtctatggattcttcaattacattgagctgatttctgacatgctgttccttctttttccctAGTTTATGCCTGTATTATTTTAGTGATTCACAATAGTGAAGATGTAGACTCAGAttctctgggtctctatgtttttggttggacaggtttctcaatttctttcttaggtttttgcattcttcatcaaaccatttgtcaatgttgttc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1592795 lncRNA downstream 800 59136961 ~ 59137258 (-) True G1394806
TU1592767 lncRNA downstream 23525 59114094 ~ 59114533 (-) True G1394778
TU1592766 lncRNA downstream 24077 59113454 ~ 59113981 (-) True G1394777
TU1592725 lncRNA downstream 58181 59040849 ~ 59079877 (-) True G1394737
TU1592702 lncRNA downstream 86120 59019837 ~ 59051938 (-) True LOC118939564
TU1592798 lncRNA upstream 3485 59141814 ~ 59142036 (-) True G1394809
TU1592790 lncRNA upstream 18887 59157216 ~ 59158953 (-) True G1394801
TU1592788 lncRNA upstream 43740 59182069 ~ 59182703 (-) True G1394799
TU1593026 lncRNA upstream 147914 59286243 ~ 59286979 (-) True G1394989
TU1592962 lncRNA upstream 154779 59293108 ~ 59293331 (-) True G1394937
XM_036947397.1 mRNA downstream 111932 59019904 ~ 59026126 (-) False LOC118939564
XR_002468998.2 mRNA downstream 241093 58886676 ~ 58896965 (-) False LOC110492420
XR_002468999.2 mRNA downstream 241093 58886676 ~ 58896965 (-) False LOC110492420
XR_002469000.2 mRNA downstream 241093 58886676 ~ 58896965 (-) False LOC110492420
XM_021566730.2 mRNA downstream 241099 58886676 ~ 58896959 (-) False LOC110492420
XR_002469001.2 mRNA upstream 37605 59175934 ~ 59206144 (-) False LOC110492425
XR_002469002.2 mRNA upstream 37605 59175934 ~ 59206144 (-) False LOC110492425
XM_036947401.1 mRNA upstream 41994 59180323 ~ 59187309 (-) False LOC110492425
XM_021566739.2 mRNA upstream 41994 59180323 ~ 59206144 (-) True LOC110492425
XM_036947420.1 mRNA upstream 275683 59414012 ~ 59538664 (-) False plxnd1
TU1592757 other downstream 25161 59111372 ~ 59112897 (-) True G1394768
TU1592300 other downstream 291042 58838756 ~ 58847016 (-) True LOC110491124
TU1592280 other downstream 390759 58746870 ~ 58747299 (-) True G1394341
TU1591975 other downstream 709945 58424458 ~ 58428113 (-) True G1394067
TU1591868 other downstream 831417 58302511 ~ 58306641 (-) True LOC110492410
TU1593009 other upstream 215871 59354200 ~ 59356849 (-) True G1394978
TU1594716 other upstream 1416427 60554756 ~ 60582035 (-) False G1396467
TU1594714 other upstream 1418709 60557038 ~ 60582035 (-) True G1396467
TU1594786 other upstream 1523227 60661556 ~ 60663516 (-) False LOC118939463
TU1594806 other upstream 1555280 60693609 ~ 60694036 (-) True G1396543

Expression Profile