RNA id: TU1594622


Basic Information

Item Value
RNA id TU1594622
length 895
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G1396379
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 60418185 ~ 60419079 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTTTAATGAAAGGAAATAGAATTCAATAACATTCAAAGGCCTCTTCTATTCTATATTAGGTGTAATCTATACAAATATCCTATATATCTTGTACATAAAATATTATACATGTTGTTATATACGAGCATATCAAATATtgttgaaacaaaaacaaaaatgatCAAGGAAAACAAAACATAATTGATTTCCCAGAATGCATTCGTTTTACCTTAAAATTGATGCCTTCAAAAATAAGCCAAACTAAATGGTTGTTAGGAATATAATTGACTATTCTAAGCAATAAGGTTAAAAGAGTATATTAACATTGTTTCCAGAGGAAAGTGATACATTCTTTGGTATCTGGAAGTGTGCACTGTCAGATTCAATGACACTCATGTACTATGACTGAagggaatttatttgaattgcactGAATTAAAATGTACTTCCTGATATTCAAATGCTACATCATGTGGGGTGTGGCCAATTCCAATTTCAACTCATGAGTTGAAGGGGATGACCTCCTCAGTGTCGGATGACCAACGCTGAGGATATGTTATACACTTGTAGAATGTTATGGAGGTTATGGAGAATTAAAACACATTTTGGCTTCCTTAAAAAGTATTCAGGGGAAAGCTAGTAGACCAACACCCCTGCTAGCCTGTGTATTGTCTACAATAAGTATTAACTGATCAAAAAGGGCAGAGGAATGGCAGAGCTTTTGATATCTGATGCATCTGGATTGATGGAATTATTGTTGTTATCATAACTGCTATTACACTCGACACTCAACCCTAAGCCTAATATGTTTCCCAAATATCTATAGATCCAGTTCATTTTAAACCAGAGGTGAGAGTGCTTTAACGAATCTGACAATTGGAGGGATGCAGATTGACTCAGTTCAATAGCTCAGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1594613 lncRNA downstream 17433 60400468 ~ 60400752 (-) True G1396370
TU1594346 lncRNA downstream 113350 60304129 ~ 60304835 (-) True G1396124
TU1594210 lncRNA downstream 234786 60139162 ~ 60183399 (-) False LOC110491133
TU1594207 lncRNA downstream 234786 60140222 ~ 60183399 (-) True LOC110491133
TU1594241 lncRNA downstream 238847 60178865 ~ 60179338 (-) True G1396039
TU1594776 lncRNA upstream 204479 60623558 ~ 60624027 (-) True G1396525
TU1594777 lncRNA upstream 206035 60625114 ~ 60625447 (-) True G1396526
TU1594778 lncRNA upstream 206636 60625715 ~ 60625943 (-) True G1396527
TU1594787 lncRNA upstream 242477 60661556 ~ 60667188 (-) True LOC118939463
TU1594789 lncRNA upstream 248788 60667867 ~ 60668144 (-) True G1396533
XM_036947466.1 mRNA downstream 74823 60142953 ~ 60343362 (-) False LOC110491133
XM_036947467.1 mRNA downstream 74824 60142953 ~ 60343361 (-) False LOC110491133
XM_036947461.1 mRNA downstream 74828 60139129 ~ 60343357 (-) False LOC110491133
XM_036947463.1 mRNA downstream 74828 60139129 ~ 60343357 (-) False LOC110491133
XM_036947465.1 mRNA downstream 74829 60139129 ~ 60343356 (-) False LOC110491133
LOC110491135 mRNA upstream 4266 60423345 ~ 60424658 (-) True LOC110491135
XM_021566810.2 mRNA upstream 12254 60431333 ~ 60454727 (-) False LOC110492466
XM_021566809.2 mRNA upstream 12254 60431333 ~ 60455209 (-) True LOC110492466
XM_021566818.2 mRNA upstream 226633 60645712 ~ 60652804 (-) False pabpc1l
XM_021566819.2 mRNA upstream 226633 60645712 ~ 60652804 (-) True pabpc1l
TU1593009 other downstream 1061336 59354200 ~ 59356849 (-) True G1394978
TU1592757 other downstream 1305288 59111372 ~ 59112897 (-) True G1394768
TU1592300 other downstream 1571169 58838756 ~ 58847016 (-) True LOC110491124
TU1592280 other downstream 1670886 58746870 ~ 58747299 (-) True G1394341
TU1591975 other downstream 1990072 58424458 ~ 58428113 (-) True G1394067
TU1594716 other upstream 135677 60554756 ~ 60582035 (-) False G1396467
TU1594714 other upstream 137959 60557038 ~ 60582035 (-) True G1396467
TU1594786 other upstream 242477 60661556 ~ 60663516 (-) False LOC118939463
TU1594806 other upstream 274530 60693609 ~ 60694036 (-) True G1396543
TU1594840 other upstream 334026 60753105 ~ 60754871 (-) True abhd6b

Expression Profile