RNA id: TU1594776


Basic Information

Item Value
RNA id TU1594776
length 470
lncRNA type intronic
GC content 0.40
exon number 1
gene id G1396525
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 60623558 ~ 60624027 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gGTGTGATCTGACGATCAGTGCTGTCCAGGATCCTTGGGTCTCCCCTACCctaaaaccctaaccttaacccctactctTACCCTACCATAACCATGATCTAACCTTAAGTCTTACTTTACCCTTAAAAATGTTAACTTCAATGGAGTAGGGATGTCTAGTACTGCATGTTCAATATCCTAGTTTATACTAGCTTGATATTGTATAGGCTACTTTATATTATGTTATTAGTTATGACACTGGTTAAtcatgtctgtgttgtatctACCCTTTAGTGTCCTCCAAAACCACAACATGATTTCAGAACCTTACCTATCATACCTACCTGCCTTACAAGCAATACCATATCTCCATCCTACCCCTCAATGTGCTCCTGTGTCCTTTTCTAGTTAATAACTACTCTGAACTGGAAACCGTTCTTACAGATGCACCCTAGTGACAATATCACTCCTTAACCTAGCTTAAGATACTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1594622 lncRNA downstream 204479 60418185 ~ 60419079 (-) True G1396379
TU1594613 lncRNA downstream 222806 60400468 ~ 60400752 (-) True G1396370
TU1594346 lncRNA downstream 318723 60304129 ~ 60304835 (-) True G1396124
TU1594210 lncRNA downstream 440159 60139162 ~ 60183399 (-) False LOC110491133
TU1594777 lncRNA upstream 1087 60625114 ~ 60625447 (-) True G1396526
TU1594778 lncRNA upstream 1688 60625715 ~ 60625943 (-) True G1396527
TU1594787 lncRNA upstream 37529 60661556 ~ 60667188 (-) True LOC118939463
TU1594789 lncRNA upstream 43840 60667867 ~ 60668144 (-) True G1396533
TU1594791 lncRNA upstream 45926 60669953 ~ 60670220 (-) True G1396535
XM_021566809.2 mRNA downstream 168349 60431333 ~ 60455209 (-) True LOC110492466
XM_021566810.2 mRNA downstream 168831 60431333 ~ 60454727 (-) False LOC110492466
LOC110491135 mRNA downstream 198900 60423345 ~ 60424658 (-) True LOC110491135
XM_036947466.1 mRNA downstream 280196 60142953 ~ 60343362 (-) False LOC110491133
XM_036947467.1 mRNA downstream 280197 60142953 ~ 60343361 (-) False LOC110491133
XM_021566818.2 mRNA upstream 21685 60645712 ~ 60652804 (-) False pabpc1l
XM_021566819.2 mRNA upstream 21685 60645712 ~ 60652804 (-) True pabpc1l
NM_001124469.1 mRNA upstream 29601 60653628 ~ 60657344 (-) True LOC100136193
LOC118939463 mRNA upstream 37887 60661914 ~ 60672085 (-) False LOC118939463
XM_021566823.2 mRNA upstream 58135 60682162 ~ 60683456 (-) False LOC110492474
TU1594716 other downstream 41523 60554756 ~ 60582035 (-) False G1396467
TU1594714 other downstream 41523 60557038 ~ 60582035 (-) True G1396467
TU1593009 other downstream 1266709 59354200 ~ 59356849 (-) True G1394978
TU1592757 other downstream 1510661 59111372 ~ 59112897 (-) True G1394768
TU1592300 other downstream 1776542 58838756 ~ 58847016 (-) True LOC110491124
TU1594786 other upstream 37529 60661556 ~ 60663516 (-) False LOC118939463
TU1594806 other upstream 69582 60693609 ~ 60694036 (-) True G1396543
TU1594840 other upstream 129078 60753105 ~ 60754871 (-) True abhd6b
TU1597246 other upstream 2110716 62734743 ~ 62735569 (-) True G1398619
TU1597892 other upstream 2575092 63199119 ~ 63292201 (-) True G1399235

Expression Profile