RNA id: TU1596447


Basic Information

Item Value
RNA id TU1596447
length 261
lncRNA type intronic
GC content 0.46
exon number 2
gene id G1397951
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 61420186 ~ 61420600 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aggagatggaTATGAGGATGCGAGACTGTTTAAagtgacagacagacggacagacagacacagtgaagagaaagaggagatggaTATGAGGATGCGAGACTGTTTAAAGTGACagacggatggacagacagacacagtgaagagaaagaggagatggaTATGAGGATGCGAGACTGTTTAAagtgacagacagacggacagacagtgaagagaaagaaaaagagcgaGAACGAGATTCAACAGTCAAATCGAGAGCGATCC

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1596310 lncRNA downstream 260525 61158624 ~ 61159661 (-) True G1397819
TU1596319 lncRNA downstream 263394 61156535 ~ 61156792 (-) True G1397828
TU1596317 lncRNA downstream 265814 61154172 ~ 61154372 (-) True G1397826
TU1596313 lncRNA downstream 275379 61143445 ~ 61144807 (-) True G1397822
TU1596279 lncRNA downstream 325481 61094007 ~ 61094705 (-) True G1397790
TU1596492 lncRNA upstream 71568 61492168 ~ 61507863 (-) True G1397992
TU1596534 lncRNA upstream 183346 61603946 ~ 61604162 (-) True G1398030
TU1596537 lncRNA upstream 185409 61606009 ~ 61606353 (-) True G1398033
TU1596539 lncRNA upstream 191571 61612171 ~ 61612404 (-) True G1398035
TU1596540 lncRNA upstream 193638 61614238 ~ 61614440 (-) True G1398036
XM_036947494.1 mRNA downstream 178309 61161972 ~ 61241877 (-) True LOC110492499
XM_021566878.2 mRNA downstream 178310 61161972 ~ 61241876 (-) False LOC110492499
XM_021566879.2 mRNA downstream 178312 61161972 ~ 61241874 (-) False LOC110492499
XM_021566855.2 mRNA downstream 440673 60973022 ~ 60979513 (-) True LOC110492489
XM_021566847.2 mRNA downstream 449387 60916746 ~ 60970799 (-) False LOC110492486
XM_036947499.1 mRNA upstream 105112 61525712 ~ 61551753 (-) False LOC110492491
XM_036947500.1 mRNA upstream 105112 61525712 ~ 61551753 (-) False LOC110492491
XM_036947501.1 mRNA upstream 105112 61525712 ~ 61551754 (-) False LOC110492491
XM_036947502.1 mRNA upstream 105112 61525712 ~ 61551754 (-) False LOC110492491
XM_036947503.1 mRNA upstream 105112 61525712 ~ 61551754 (-) True LOC110492491
TU1594840 other downstream 665315 60753105 ~ 60754871 (-) True abhd6b
TU1594806 other downstream 726150 60693609 ~ 60694036 (-) True G1396543
TU1594786 other downstream 756670 60661556 ~ 60663516 (-) False LOC118939463
TU1594716 other downstream 838151 60554756 ~ 60582035 (-) False G1396467
TU1597246 other upstream 1314143 62734743 ~ 62735569 (-) True G1398619
TU1597892 other upstream 1778519 63199119 ~ 63292201 (-) True G1399235
TU1598025 other upstream 1964249 63384849 ~ 63385262 (-) True G1399367
TU1599309 other upstream 2682770 64103370 ~ 64105039 (-) True G1400503
TU1599365 other upstream 2836326 64256926 ~ 64257433 (-) True G1400552

Expression Profile