RNA id: TU1596868


Basic Information

Item Value
RNA id TU1596868
length 3556
lncRNA type antisense_over
GC content 0.39
exon number 4
gene id G1398341
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 62173164 ~ 62177424 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTCCAATCCATTTGCATTTATTTTCTCTCTATCACATTTACATCACATCATCATCATGACATCAAGTCACCCATCCACTCGAGCACATGTCAGACAGACATGAGCAATAAAACACTTCTGCACCAGACATAATGAGagcacatcaatcaatcaatatgaACAAGATAATAAAGCAACCAAAAGAAAGTAAGTTTCCCTCCCACCAACCACAATGCTCTGACACAGCACAGCAAGagaacaacagtcagacagttaCAACAAGAAAACAGAtaaaagacaaagacaaacagcacaGATTGGTGTGTTGTTTAAGAGCATGATAGAAGAAGCAGCACAGAGTTGAGTGGAGCCTCCATAGTGATGACGATGTGTTACATTTGATTTGGTTGGAGATCCATTGGCTTTGCTGCTGCTGAGCTGCTGGGCTGGACTCATCAACATGGACATTCAACGAGCAAACAAAGGATAGAATGATGTAACATTAGGAAATAAAGGCTTTCTTTCTGCACATTTCAAGGGCTCGGTTAGCTTAATATACTgggtattgactttggggggggggaacTACAGTCAATACTGATAGTTtaaaagagagagacgggggaaacAATTAGAGAAAAATAGAttgggagatagagaggaagcgAGTCAGAGGGAAAGGTACAGGTACAATTTGGTGGCATGTAgcttagcggttaagagtgttgggccaataaccgaaaggttgcgagtttgaatccccgagccgccTAGGTGATTTGTTTCCCACAAAAGACAATGACAACATGTATTCGAATAAATACTTATTTGGCAGGGAGACAGAAAAAGTAGGTAGCACATTTTCTGAAACGCCTGTGTACAATACATTATGACTGCATTCATAGCACAGTCGATCACTCCATAGTGTATTATAAGACTTGCCATAAGCATTCACAACAGCTCACGGTTCCTATACACTGGGTGTCATTTCatcgtctagttttgatttacatttggttgagttgtcaactaacgtgaattcaacgtgaaatcaacaaaacatttcaccatgttaTTGGATCTagtttaaaagttgggtgaaaaaattACGAAATTCCCTTACATTTTACAAACCCAATcaattttccacgttgattcaaaaGTCATCACATttcatgtttttgttgaaatgacgtggaaacaacgttgattcaaccagtttttgtccAGTGGGTTCTGACCACTTACATAACCAAAATACATAACACCTTTATAAGCACATTCAATATGTGCattaaagtagtgcagtatatggCCTGCTATAAGCATTCATAACAGTTCATGACTCCTTATAACAGCCTAAATAAAGGCCTACATACCAATAAATGCATTCATAATAGATCACACCAGGTGACTCACAGAAAGGTCACCAAAAGGTCAAGTTAGTTCTTGTTAGAATTAAAGCGTCTCATTGCACAATGTAAGAAGGTTAATGGGCAATTACATGGTAACAGAATTATGCTGAGACtaagatttttcactttaaaatgtatgtcaaacaaaaccaatgattgcaaagttaaacaaaccatacaactctatgcacaaggactactttgaacaatttccactgaatatttgacaaaaacacatttacttgaagaacagtgcagatgctaAATTTGGCACCAGaatgacagtttgtgctgtttgtgCCATCATTCTGTCAGAGTGCACTAACAGTAGAAACTAGCCAGCGTTACAACAAGAAACAAGCTTTTCTTTTTGTAGGTTTTACATTCATCTACGTTATTTCGCCACTTTTCCCCTGAACTGCAATATATGTTATATTAACTACAGCTTCTCAAACACGCACACCAACAATCTGAGCAATTCTACCTTACAAAGTTTCATTTTTGTTTAACAGACACACAACAATATATGAAAAAAGTTTCAGGGTTGTCTTTACGTTGCATATGTACAGGAAAGGCCTGAAACTACAAATCCATCTCGAATAATCGTCACTGCTTGTCCCACTCTTTCTCCACCTATTACAAAGTCCCAGTTCCACAAACACACCCAATCAGCCCTCTCTCTACAATCCAAAACCTCAGGTCTCCTAAAAACAGCCGTAGGGATGGCAGTTATCACTCAAACCCACCTGACCCTCCCCTATTCCATACCAGGTCAACTTACTGTGGGTGAGGCCTTAGATTCATCCAGTTTATCAATGTAGGTAGTAGCAAGTGGATAAAGAGTGTTCCCCTTCATTAGCCCTGGCCAATGACCCATAAAACCACTTTAGTGCAATTAAATACCAGAGGCGGGTTTTGTGGCAGGCATAGGGGTGTGAATGAGATtgggaacaacagactagatTGGTCTGAAAAGTACTCAAACGTATGAATGGCCAATCTGCTGCCAGTAGGACCAAACACAAGATTGATGTTTCGATTGGTGGAGAAGAGTCAAGTCCGGAAAGAAAACCTATTCTCTGTACACTACCTCATCTCAATAAAGTGTGAAAGAGGCAAGCGCCTTTTAGGCAAAGGAAGACTAAACTAAATTCTTGTGAAAGCAGTGTATGAGTATGCTACATAAGGAAGGAAGACTAAACTAAATTCTTGTGAAAGCAGTGTATGAGTATGCTACATAAGGAAGGAAGACTAAACTAAATTCTTGTGAAAGCAGTGTATGAGTATGCTCCGTAAGGAAGGAAGACTAGACTAAATTATTGTGAAAGCAGTGTATGAGTATGCTACGTAAGGAAGGAAGAATAAACTAAATTCTTGTGAAAGCAGTGTATGAGTATGCTACGTAAGGAAGGAAGTCTAAACTAAATTCTTGTGAAAGCAGTGTATGAGTATGCTCCGTAAGGAAGGAAGACTAAACTAAATTCTTGTGAAAGCAGTGTATGAGTATGCTACGTAAGGAAGGAAGACTAAACTAAATTCTTGTCAAAGCAGTGTATGAGTATTCTCCGTAAGGAAGGAAGACTAAACTAAATTCTTGTGAAAGCAGTGTATGCTACGTAAGGAAGTCTAAACTAAATTCTTGTGATAGCAGTGTATGAGTATGCTCCGTAAGGAAGGAAGACTAAACTAAATTCTTGTGAAAGCAGTGTATGAGTATGCTACGTAAGGAAGGAAGACTAAACTAAATTCTTGTGAAAGCAGTGTATGAGTATGCTACGTAAGGAAGGAAGACTAAACTAAATTCTTGTGAAAGCAGTGTATGAGTATGCTACGTAAGGAAGGAAGACTAAACTAAATTCTTGTGAAAGCAGTGTATGAGTATGCTCCGTAAGGAAGGAAGACTAAACTACATTCTTGTGAAAGCAGTGTATGAGTAGGCTCCGTAGGGAAAGCCCATAGTGTTGAAACACCATGATTTATCTGTTCTTAAGAAGACAACAAGCAACCATTGACTAACTGAGGGCTACCTCTGGACCAGTGTTTCCCCATATATTACCAAGTTAGGGCAGACCATCTGAGATGTGACTTCAGGGGTCTTCTTGGTGCACCaccacaatagaaaagtctaggGGAAACCCGGACACACAAAGTACCGCTGTACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1596889 lncRNA downstream 13030 62159830 ~ 62160134 (-) True G1398361
TU1596797 lncRNA downstream 114561 62057903 ~ 62058603 (-) True G1398279
TU1596763 lncRNA downstream 124918 62047478 ~ 62048246 (-) True G1398245
TU1596773 lncRNA downstream 155497 62016161 ~ 62017667 (-) True G1398255
TU1596768 lncRNA downstream 162450 62010469 ~ 62010714 (-) True G1398250
TU1596864 lncRNA upstream 12520 62189944 ~ 62194939 (-) False LOC110529871
TU1596865 lncRNA upstream 12520 62189944 ~ 62194939 (-) False LOC110529871
TU1596866 lncRNA upstream 12520 62189944 ~ 62194939 (-) True LOC110529871
TU1596900 lncRNA upstream 33961 62211385 ~ 62211971 (-) True G1398372
TU1596906 lncRNA upstream 42085 62219509 ~ 62220378 (-) True G1398378
XM_036947509.1 mRNA downstream 229343 61814544 ~ 61943821 (-) False LOC110492510
XM_036947508.1 mRNA downstream 232109 61816555 ~ 61941055 (-) True LOC110492510
XM_021566897.2 mRNA downstream 232110 61814544 ~ 61941054 (-) False LOC110492510
XM_036947507.1 mRNA downstream 232110 61814544 ~ 61941054 (-) False LOC110492510
XM_021566868.2 mRNA downstream 376449 61779118 ~ 61796715 (-) True LOC110492496
XM_036947514.1 mRNA upstream 3805 62181229 ~ 62311172 (-) False LOC110529871
XM_036947515.1 mRNA upstream 6737 62184161 ~ 62311178 (-) False LOC110529871
XM_036947513.1 mRNA upstream 17181 62194605 ~ 62311208 (-) False LOC110529871
XM_036947518.1 mRNA upstream 151364 62328788 ~ 62366778 (-) False uckl1b
XM_036947523.1 mRNA upstream 151364 62328788 ~ 62375435 (-) False uckl1b
TU1594840 other downstream 1418293 60753105 ~ 60754871 (-) True abhd6b
TU1594806 other downstream 1479128 60693609 ~ 60694036 (-) True G1396543
TU1594786 other downstream 1509648 60661556 ~ 60663516 (-) False LOC118939463
TU1594716 other downstream 1591129 60554756 ~ 60582035 (-) False G1396467
TU1597246 other upstream 557319 62734743 ~ 62735569 (-) True G1398619
TU1597892 other upstream 1021695 63199119 ~ 63292201 (-) True G1399235
TU1598025 other upstream 1207425 63384849 ~ 63385262 (-) True G1399367
TU1599309 other upstream 1925946 64103370 ~ 64105039 (-) True G1400503
TU1599365 other upstream 2079502 64256926 ~ 64257433 (-) True G1400552

Expression Profile