RNA id: TU1597071


Basic Information

Item Value
RNA id TU1597071
length 3395
lncRNA type intronic
GC content 0.42
exon number 4
gene id G1398486
representative False

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 62520105 ~ 62641136 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agaagagaaacagggtgatagacagtggagaagaagagaaacagagtgatagacagtggagaagaagagaaacagggtgatagacagtggagaagaagagaaacagagtgatagacagtggagaagaagagaaacagagtgatagacagtggagaagaagagaaacagagtgatagacagtggagaagaagagaaaacagggtgatagactgaaagaagaagagaaacagagtgatagacagtgaagaagaagagaaacagagtgatagacagtttagaagaagagaaacagagtgatagactgaaagaagaagagaaacagagtgatagagtggagaagaagagaaacagggtgatagacagtggagaagaagagaaacagagtgatagacagtggagaagaagagaaacagagtgatagacagtggagaagaagagaaacagggtgatagactgaaagaagaagagaaacagagtgatagacagtggagaagaagagaaacagggtgatagactgaaagaagaagagaaacagagtgatagacagtggagaagaagagaaacagagtgatagactgaaagaagaagagaaacagagtgatagacagtggagaagaagagaatgagagtgatagacagtggagaagaagagaaacagagtgatagactgaaagaagaagagaaacagagtgatagacagtggagaataagagaaacagggtgatagacagtggagaagaagagaaacagggtgatagacagtggagaagaagagaaacagtgtgatagacagtggagaagaagagaaacagagtgatagacagtggagaagaagataaacagagtgatagacagtggagaagaagagaaacagagtgatagactgaaagaagaagagaaacagagtgatagacagtggagaagaagagaaacagggtgatagacagtggagaagaagagaaacagagtgatagacagtggagaagaagagaaacagagtgatagactgaaagaagaagagaaacagagtgataaacagtggagaagaagagaaacagtgtgataaacagtggagaagaagagaaacagagtgatagacagtggagaagaagagaaacagggtgatagacagtggagaagaagagaaacagggtgatagacagtggagaagaagagaaacagggtgatagacagtggagaagaagagaaacagtgtgatagacagtggagaagaagagaaaaagcgtgatagactgaaagaagaagagaaacagagtgatagacggtggagaagaagagaaacagggtgatagacagtggagaagaagagaaacagggtgatagacagtggagaagaagagaaacagagtgatagacagtggagaagaagagaaacagagtgatagacagtggagatgaagagaaacagggtgatagacagtggagaagaagagaaacagagtgatagacagtggagaagaagagaaacagagtgatagactgaggagaagaagagaatcagggtgatagacagtggagaagaagagaaacagagtgatagacagtggagaagaagacaaacagagtgatagacagtggagaagaagagaaacagagtgatagacagtggagaagaagagaaacagagtgatagacagtggagaagaagagaaacagggtgatagacagtggagaagaaaagaaacagagtgatagacagtggagaagaagagaaacagagtgatagacagtggagaagaagagaaacagagtgatagacagtggagaagaagataaacagagtgatagacagtggagaagaagagaaacagagtgatagactgaaagaagaagagaaacagagtgataaacagtggagaacaagagaaacagggtgatagacagtggagaagaagagaaacagggtgatagacagtggagaagaagagaaacagagtgatagactgaaagaagaagagaaacagagtgatagacagtggagaagaagagaaacagggtgatagacagtggagaagaagagaaacagagtgatagacagtggagaagaagagaaacagagtgatagactgaaagaagaagagaaacagagtgataaacagtggagaagaagagaaacagtgtgataaacagtggagaagaagagaaacagagtgatagacagtggagaagaagagaaacagggtgatagacagtggagaagaagagaaacagggtgatagacagtggagaagaagagaaacagggtgatagacagtggagaagaagagaaacagtgtgatagacagtggagaagaagagaaaaagcgtgatagactgaaagaagaagagaaacagagtgatagacagtggagaagaagagaaacagggtgatagacagtggagaagaagagaaacagggtgatagactgtggagaagaagagaaacagagtgatagacagtggagaagaagagaaacagggtgatagactgaaagaagaagataaacagagtgatagacagtggagaagaagagaaacagggtgatagactgaaagaagaagagaaacagggtgatagacagtggagaagaagagaaacagggtgattgactgaaagaagaagagaaacagagtgatagacagtggagaagaagagaaacagggtgatagacagtggagaagaagagaaacagagtgatagactgaaagaagaagagaaacagagtgatagagtggagaagaagagaaacagggtgatagacagtggagaagaagagaaacagagtgatagacagtggagaagaagagaaacagagtgatagacagtggagaagaagagaaacagggtgatagactgaaagaagagaaacagagtgatagacagtggagaagaagagaaacagggtgatagactgaaagaagaagagaaacagagtgatagacagtggagaagaagagaaacagagtgatagacagtggagaagaagagaaacagggtgatagactgaaagaagaagagaaacagagtgatagacagtttagaagaagagaaacagagtgatagactgaaagaagaagagaaacagagtgatagacagtggagaagaagataaacagggtgatagacagtggagaagaagagaaacagagtgatagacagtggagaagaagagaaacagggtgatagacagtggagaagaagagaaacagagtgatagacagtggagaagaagagaaacagggtgatagacagtggagaagaagagaaacagggtgatagacagtggagaagaagagaaacagggtgatagactgaaagaagaagagaaacagagtgatagactgggagaagaagagaaacagggtgatagacagtggagaagaagagaaacagg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1597141 lncRNA downstream 18552 62500230 ~ 62501553 (-) True G1398520
TU1597103 lncRNA downstream 51932 62465253 ~ 62468173 (-) True G1398487
TU1597028 lncRNA downstream 84941 62434144 ~ 62435164 (-) True G1398473
TU1597016 lncRNA downstream 124050 62394625 ~ 62396055 (-) True G1398462
TU1596995 lncRNA downstream 183033 62335940 ~ 62337072 (-) True G1398443
TU1597049 lncRNA upstream 5309 62553685 ~ 62569543 (-) False G1398486
TU1597094 lncRNA upstream 5309 62553685 ~ 62578492 (-) False G1398486
TU1597076 lncRNA upstream 9223 62557599 ~ 62616056 (-) False G1398486
TU1597097 lncRNA upstream 12848 62561224 ~ 62578492 (-) False G1398486
TU1597050 lncRNA upstream 13703 62562079 ~ 62569543 (-) False G1398486
XM_036947525.1 mRNA downstream 60621 62387428 ~ 62459484 (-) False LOC110492495
XM_036947526.1 mRNA downstream 60621 62387428 ~ 62459484 (-) False LOC110492495
XM_036947527.1 mRNA downstream 60621 62387428 ~ 62459484 (-) True LOC110492495
XM_036947528.1 mRNA downstream 82974 62387428 ~ 62437131 (-) False LOC110492495
XR_005036578.1 mRNA downstream 172996 62342366 ~ 62347109 (-) True LOC118939568
XM_036947534.1 mRNA upstream 411589 62959965 ~ 62990979 (-) False b4galt5
XM_036947533.1 mRNA upstream 411589 62959965 ~ 63008499 (-) True b4galt5
XM_021566909.2 mRNA upstream 876535 63424911 ~ 63429479 (-) False LOC110492520
XM_021566908.2 mRNA upstream 876535 63424911 ~ 63429527 (-) True LOC110492520
XM_036947536.1 mRNA upstream 1515874 64064250 ~ 64081609 (-) True LOC110492523
TU1594840 other downstream 1765234 60753105 ~ 60754871 (-) True abhd6b
TU1594806 other downstream 1826069 60693609 ~ 60694036 (-) True G1396543
TU1594786 other downstream 1856589 60661556 ~ 60663516 (-) False LOC118939463
TU1594716 other downstream 1938070 60554756 ~ 60582035 (-) False G1396467
TU1597246 other upstream 186367 62734743 ~ 62735569 (-) True G1398619
TU1597892 other upstream 650743 63199119 ~ 63292201 (-) True G1399235
TU1598025 other upstream 836473 63384849 ~ 63385262 (-) True G1399367
TU1599309 other upstream 1554994 64103370 ~ 64105039 (-) True G1400503
TU1599365 other upstream 1708550 64256926 ~ 64257433 (-) True G1400552

Expression Profile