RNA id: TU1597046


Basic Information

Item Value
RNA id TU1597046
length 2917
lncRNA type intronic
GC content 0.44
exon number 5
gene id G1398486
representative False

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 62520105 ~ 62641136 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctttgttcagggacacatttttcaatttctgttagtcacatgtctgtggaaattgttcaattgttgaatcttgtgttcatacaaatatttatacatgTTAAGTTAGCTGAaagtaaacgcagttgacagtgagaggatgttttgcTGGGTTTTAGAAGTTTGAAAAACAAGGAGATGGGGCAGAGAAGGAGTGAAGAAGAAGAATAatatgaagggagagagatgagggatgcTGTTAAAATATGGTGGAAGAAAGGAGAAATTATATTATAGGGGCCTACGGTGTGAATACTGCAGCAGGCGTATATGAAGACTTATTgtgagtggtagaggtagaggtagaggtaaggACTGGGGAGGTGTGAGGGGCACGTGAAGGGTGATGAGTCTCATGTCTGTGAGGGACTCTGGGTGGAGAGACAGATTAAAGGGATGATTGAATAATGACATGAcagtaaaggagggagggagggatgaaaatGTGATTAAAACAGggggacagaaaaagagagaggggagagggagcacaaaagaggggagagacagaggaagaggttGGGGAGGAAgctgagagaagaggggagagacagaggaagaggaagggaaggaatctgagagaagaagggagagacagaggaagaggaaggggaggaatctgagagaagaggggagaggcagaggaagaggaaggggagggagctgagagaagaggggagagacagaggaagaggaagctgagagaagaggggagagacagagaaagaggaatctgagagaagaggggagaggcagaggaagaggaagctcagagaagaggggagagacagaggaagggaaggaatcttagagaagaggggagagacggaggaagagaaagaggaagctgagagaagaggggagagacagaggaagagaattGGAGGAATCCAATGGAAGGAATccgagagatgaggggagagacagaggaaggggagggagtctagagaagaagaagaagagaaacagagtgataaacagtggagaagaagagaaacagagtgatagactgaaagaagaagagaaacagggtgatagacagtggagaagaagagaaacagggtgatagacagtggagaagaagagaaacagggtgatagacagtggagaagaagagaaacagagtgatggacagtggagaagaagagaaacagggtgatagacagtggagaagaagagaaacagggtgatagacagtggagaagaagagaaacagagtgatagacagtggagaagaagagaaacagggtgatagacagtggagaagaagagaaacagggtgatagacagtggagaagaagagaaacagagtgatagacagtggagaagaagagaaacagggtgatagacagtggagaagaagagaaacagggtgatagacagtggagaagaagagaaacagagtgatagacagtggagaagaagagaaacagggtgatagacagtggagaagaagagaaacagagtgatagacagtggagaagaagagaaacaggatgatagacagtggagaagaagagaaacagggtgatagacagtggagaagaagagaaacagggtgataaacagtggagaagaagagaaacagagtgatagacagtggagaagaagagaaacagagtgatagactgaggagaagaagagaatcagggtgatagacagtggagaagaagagaaacagggtgatagacagtggagaagaagagaaacagtgtgatagacagtggagaagaagagaaaaagcatgatagactgaaagaagaagagaaacagagtgatagacagtggagaagaagagaacagggtgatagacagtggagaagaagagaaacagggtgatagacagtggagaagaagagaaacagagtgatagacagtggagaagaagagaaacagagtgatagacagtggagatgaagagaaacagtgtgatagacagtggagaagaagagaaaaagcgtgatagactgaaagaagaagagaaacagagtgatagacagtggagaagaagagaaacagggtgatagacagtggagaagaagagaaacagggtgatagacagtggagaagaagagaaacagagtgctagacagtggagaagaagagaaacagagtgatagacagtggagaagaagagaaacagggtgatagacagtggagaagaagagaaacagagtgatagacagtggagaagaagagaaacagagtgatagacagtggagaagaagagaatcagggtgatagacagtggagaagaagagaaacagagtgatagacagtggagaagaagagaaacagggtgatagacagtggagaagaagagaaacagagtgatagacagtggagaagaagagaaacagagtgatagacagtggagaagaagagaaacagagtgatagacagtggagaagaagagaaacagagtgatagactgaaagaagaagagaaacagagtgatagacagtggagaagaagagaaacagggtgatagacagtggagaagaagagaaacagtgtgataaacagtggagaagaagagaaacagagtgatagacagtggagaagaagagaaacagggtgatagacagtggagaagaagagaaacagggtgatagacagtggagaagaagagaaacagtgtgatagacagtggagaagaagagaaacagggtgatagacagtggagaagaagagaaacagagtgatagacagtggagaagaagagaaacagtgtgatagacagtggagaagaagagaaacagggtgatagacagtggagaagaagagaaacagagtgatagacagtggagaagaagagaaacagagtgatagacagtggagaagaagataaacagagtgatagacagtggagaagaagaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1597082 lncRNA downstream 4793 62524491 ~ 62560231 (-) False G1398486
TU1597092 lncRNA downstream 11516 62539025 ~ 62553508 (-) False G1398486
TU1597068 lncRNA downstream 12572 62520105 ~ 62552452 (-) False G1398486
TU1597069 lncRNA downstream 12572 62526476 ~ 62552452 (-) False G1398486
TU1597083 lncRNA downstream 12572 62526476 ~ 62552452 (-) False G1398486
TU1597173 lncRNA upstream 50523 62629015 ~ 62633212 (-) True G1398549
TU1597182 lncRNA upstream 62771 62641263 ~ 62641829 (-) True G1398556
TU1597215 lncRNA upstream 120210 62698702 ~ 62699356 (-) True G1398588
TU1597214 lncRNA upstream 125460 62703952 ~ 62706377 (-) True G1398587
TU1597238 lncRNA upstream 150596 62729088 ~ 62729336 (-) True G1398611
XM_036947525.1 mRNA downstream 105540 62387428 ~ 62459484 (-) False LOC110492495
XM_036947526.1 mRNA downstream 105540 62387428 ~ 62459484 (-) False LOC110492495
XM_036947527.1 mRNA downstream 105540 62387428 ~ 62459484 (-) True LOC110492495
XM_036947528.1 mRNA downstream 127893 62387428 ~ 62437131 (-) False LOC110492495
XR_005036578.1 mRNA downstream 217915 62342366 ~ 62347109 (-) True LOC118939568
XM_036947534.1 mRNA upstream 381473 62959965 ~ 62990979 (-) False b4galt5
XM_036947533.1 mRNA upstream 381473 62959965 ~ 63008499 (-) True b4galt5
XM_021566909.2 mRNA upstream 846419 63424911 ~ 63429479 (-) False LOC110492520
XM_021566908.2 mRNA upstream 846419 63424911 ~ 63429527 (-) True LOC110492520
XM_036947536.1 mRNA upstream 1485758 64064250 ~ 64081609 (-) True LOC110492523
TU1594840 other downstream 1810153 60753105 ~ 60754871 (-) True abhd6b
TU1594806 other downstream 1870988 60693609 ~ 60694036 (-) True G1396543
TU1594786 other downstream 1901508 60661556 ~ 60663516 (-) False LOC118939463
TU1594716 other downstream 1982989 60554756 ~ 60582035 (-) False G1396467
TU1597246 other upstream 156251 62734743 ~ 62735569 (-) True G1398619
TU1597892 other upstream 620627 63199119 ~ 63292201 (-) True G1399235
TU1598025 other upstream 806357 63384849 ~ 63385262 (-) True G1399367
TU1599309 other upstream 1524878 64103370 ~ 64105039 (-) True G1400503
TU1599365 other upstream 1678434 64256926 ~ 64257433 (-) True G1400552

Expression Profile