RNA id: TU1597173


Basic Information

Item Value
RNA id TU1597173
length 2759
lncRNA type intronic
GC content 0.49
exon number 6
gene id G1398549
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 62629015 ~ 62633212 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggATAGGACTaaaggagggagtagtagaggtggATAGGACTaaaggagggagtagtagaggtggATAGAACTGAAGGAGGGAGTAGttgaggtggtagaggtggatagGACTGaaggagggagtagtagaggtggATAGGACTGAAGGAGGGGGTTGTAGAGATGGATAGGTCTGAAGGATGGAGTAGgtaaggtggtagaggtggatagGACTGaaagagggagtagtagaggtggataggtctgaaggagggagtagtagaggtggtAACGTGGaaggagggagtagtagaggtggATAGGACTGAAGGAGGGGGTTGTAGAGATGGATAGGTCTGAAGGATGGAGTAGgtaaggtggtagaggtggatagGACTGaaagagggagtagtagaggtggataggtctgaaggagggagtagtagaggtggtAACGTGGAAGGAGGGAGTAGTACAGGTGGATAGGTCTGAAGGAGAGagtagtagaggtggtagaggtttATAGGTCTGaaggagggagtagtagaggtggtagaggtggattGGACTGaatgagggagtagtagaggtggATAGGACTGAATGAGGGAGTAATAGAGGTGGATAGGACTGAAGGAGGAagtagtagaggtggtagaggtggatagTACTGaatgagggagtagtagaggtagATAGGACTGaaggagggagtagtagagggggataggactgaatgagggagtagtagagtTGTATAGTACTGAAGGAGGTAGTAGTAGACGTGGATAGGTCTGaatgagggagtagtagaggtggtagaggtggatagGTCTGAAGGAGGGAGTTGTAGAAGTGGATAGGTCTGATTGAGGGAGATAGTAGAGGTGGATAGGATTGAAGGAGGGAATAGTAGAGGTGGATAGGACTGaaggagggagtagtagaggtgaTAGAGGTGGATAGGTCTGAAGGAGGGGGCAGTAAAGGTGGATAGGACTGAAGGAGGGAGTTCTAGAGGTAGATAGGACTGaatgagggagtagtagagggtgataggtctgaaggagggagtagtagaggtggtagaggtggatagGTCTGAAGGAGGGAATAGTAGAGGTGGTAGAGATGGATAGGACTGaatgagggagtagtagagaTGGATAGGACTGCATGAGGGAATAGTAGAGGTGGATAGGACTTAAgaagggagtagtagaggtggtACAGGTGGATAGGACTGAAGGCGGGACTGGTAGGGGTGGTAGAGATGGATAGGACTGAAGGAGGTAGTAATAGACATAGATAGGACTGaatgagggagtagtagaggtggATAGGACTTAAGGAGGGAGTAGTAGGGGTGGTAGAGGTGGATAGGTCTGAgggagggagtagtagaggtggtTGAGATGGATAGGACTGaatgagggagtagtagaggtggATAGGACTGAAGAAGGGAGTAGTAGATGTGGTACAGGTGGATAGGACTGaatgagggagtagtagaggtggataggactgaatgagggagtagtagaggttgATTGCTCTGAAGGAGGGAGAAGTAGATTGTGGATAGGACTGAAGGAGGAAGTAGTGGAGATGGATAGGTCTGAAGGAGGGAGTAGTGGAGGTGGATAGGACTGaatgagggagtagtagaggttgATTGCTCTGAAGGAGGGAGAAGTAGATTGTGGATAGGACTGAAGGATGGAGttgtagaggtggtagaggtggatagGACTGAAGGAGAGATTAGTAGAGGTGGATAGGACTGaaggagggagtagtagaggtggATAGGACTTAAGGAGGGAGTAGTGGGGGTGGTAGAGGTGGATAGGTCTGAgggagggagtagtagaggtggtATAGGTGGATAGGACTGAATGAGAGTGTAGTAGAGGTGGATAGGACTTAAGGAGGGAGTAGTAGGGGTGGTAGAGGTGGATAGGTCTGAAGTGGGGAGTAGTGGAGgtggATAGCTCTGaaggagggagtagtagaggtggtagaggtggataaGACTGAAGGAGGGAGTTGTAGAGGTGAATAGGACTGaatgagggagtagtagaggtggATAGGTCTGAAGGAGGGAGTAGTGGAGGTGGATAGGACTGaatgagggagtagtagaggtggATAGCTCTGAAGGAGGGTGTTGTAGAGGTGGATAGCTCTGaaagagggagtagtagaggtggCAGAGGTGGATAGGACTGaatgagggagtagtagaggtggATAGGACTGaaggagggagtagtagaggtggataggactgaatgagggagtagtagaggtggATAGGACTGaaggagggagtagtagaggtggATAGGACTGAATAAGGGAGTAGTAGAGATGGATAGGACTGAAGGAGGGAGTAATAGAGgtggATAGGACTGAAGGAGGGAGTAATAGACGTAGATAGGACTGaatgagggagtagtagaggtggATAGCTCTGAAGGAGGGAGTattagaggtggtagaggtggataaGACTGAAGGagtagtagaggtggtagaggtggataggactgaatgagggagtagtagaggtggATTAGACTGAATGAGGGAGTACTTGAGGTGGATAGGCCTGATCAAGGGAGTAATAGACGTAGATAGGACTGaatgagggagtagtagaggtggATAGCTCTGAAGGAGGGAGTattagaggtggtagaggtggataaGACTGAAGGagtagtagaggtggtagaggtggataggactgaatgagggagtagtagagg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1597076 lncRNA downstream 12959 62557599 ~ 62616056 (-) False G1398486
TU1597089 lncRNA downstream 21400 62562079 ~ 62607615 (-) False G1398486
TU1597079 lncRNA downstream 50523 62520105 ~ 62578492 (-) False G1398486
TU1597081 lncRNA downstream 50523 62520105 ~ 62578492 (-) False G1398486
TU1597095 lncRNA downstream 50523 62539416 ~ 62578492 (-) False G1398486
TU1597182 lncRNA upstream 8051 62641263 ~ 62641829 (-) True G1398556
TU1597215 lncRNA upstream 65490 62698702 ~ 62699356 (-) True G1398588
TU1597214 lncRNA upstream 70740 62703952 ~ 62706377 (-) True G1398587
TU1597238 lncRNA upstream 95876 62729088 ~ 62729336 (-) True G1398611
TU1597244 lncRNA upstream 100636 62733848 ~ 62734113 (-) True G1398617
XM_036947525.1 mRNA downstream 169531 62387428 ~ 62459484 (-) False LOC110492495
XM_036947526.1 mRNA downstream 169531 62387428 ~ 62459484 (-) False LOC110492495
XM_036947527.1 mRNA downstream 169531 62387428 ~ 62459484 (-) True LOC110492495
XM_036947528.1 mRNA downstream 191884 62387428 ~ 62437131 (-) False LOC110492495
XR_005036578.1 mRNA downstream 281906 62342366 ~ 62347109 (-) True LOC118939568
XM_036947534.1 mRNA upstream 326753 62959965 ~ 62990979 (-) False b4galt5
XM_036947533.1 mRNA upstream 326753 62959965 ~ 63008499 (-) True b4galt5
XM_021566909.2 mRNA upstream 791699 63424911 ~ 63429479 (-) False LOC110492520
XM_021566908.2 mRNA upstream 791699 63424911 ~ 63429527 (-) True LOC110492520
XM_036947536.1 mRNA upstream 1431038 64064250 ~ 64081609 (-) True LOC110492523
TU1594840 other downstream 1874144 60753105 ~ 60754871 (-) True abhd6b
TU1594806 other downstream 1934979 60693609 ~ 60694036 (-) True G1396543
TU1594786 other downstream 1965499 60661556 ~ 60663516 (-) False LOC118939463
TU1594716 other downstream 2046980 60554756 ~ 60582035 (-) False G1396467
TU1597246 other upstream 101531 62734743 ~ 62735569 (-) True G1398619
TU1597892 other upstream 565907 63199119 ~ 63292201 (-) True G1399235
TU1598025 other upstream 751637 63384849 ~ 63385262 (-) True G1399367
TU1599309 other upstream 1470158 64103370 ~ 64105039 (-) True G1400503
TU1599365 other upstream 1623714 64256926 ~ 64257433 (-) True G1400552

Expression Profile