RNA id: TU1597182


Basic Information

Item Value
RNA id TU1597182
length 485
lncRNA type intronic
GC content 0.43
exon number 2
gene id G1398556
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 62641263 ~ 62641829 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gagagagagagagtgaggatggGATGGAGGTGTAGAGAGATTAAAACTAGAGATTTAATTTTCTGAAAGGGTTCAACTAATTTGCTATAATTTTATGGAGGGATTCCTTCCCTCACATACCACACTAGTTTAGTTACCCACCTAATGGAAGTCTGTGGtcttaaacacacacaaacacaaactcacACGAACCTACACAAACgtgcacatacatgcacacacttaCACGCAGTAGGCAATCAGTGCCTTCCACCCTCTGCTGAAGATGGGGTGAATGTGCACAAATTGATATGCAAGATCATAATTGACTTTCTGGATGTGCGTTGGATTGTTATGGACCAATTTACAGTACAGCTAAGTTATTATACCCTTCATCTGTTGCtacccctatcctatcctctctctctctctctctctctgtctctctctctctctctctctctctctctctctctcgttctctctctctctctctctctctctct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1597088 lncRNA downstream 127 62520105 ~ 62641136 (-) False G1398486
TU1597173 lncRNA downstream 8051 62629015 ~ 62633212 (-) True G1398549
TU1597076 lncRNA downstream 25207 62557599 ~ 62616056 (-) False G1398486
TU1597089 lncRNA downstream 33648 62562079 ~ 62607615 (-) False G1398486
TU1597079 lncRNA downstream 62771 62520105 ~ 62578492 (-) False G1398486
TU1597215 lncRNA upstream 56873 62698702 ~ 62699356 (-) True G1398588
TU1597214 lncRNA upstream 62123 62703952 ~ 62706377 (-) True G1398587
TU1597238 lncRNA upstream 87259 62729088 ~ 62729336 (-) True G1398611
TU1597244 lncRNA upstream 92019 62733848 ~ 62734113 (-) True G1398617
TU1597247 lncRNA upstream 95250 62737079 ~ 62737426 (-) True G1398620
XM_036947525.1 mRNA downstream 181779 62387428 ~ 62459484 (-) False LOC110492495
XM_036947526.1 mRNA downstream 181779 62387428 ~ 62459484 (-) False LOC110492495
XM_036947527.1 mRNA downstream 181779 62387428 ~ 62459484 (-) True LOC110492495
XM_036947528.1 mRNA downstream 204132 62387428 ~ 62437131 (-) False LOC110492495
XR_005036578.1 mRNA downstream 294154 62342366 ~ 62347109 (-) True LOC118939568
XM_036947534.1 mRNA upstream 318136 62959965 ~ 62990979 (-) False b4galt5
XM_036947533.1 mRNA upstream 318136 62959965 ~ 63008499 (-) True b4galt5
XM_021566909.2 mRNA upstream 783082 63424911 ~ 63429479 (-) False LOC110492520
XM_021566908.2 mRNA upstream 783082 63424911 ~ 63429527 (-) True LOC110492520
XM_036947536.1 mRNA upstream 1422421 64064250 ~ 64081609 (-) True LOC110492523
TU1594840 other downstream 1886392 60753105 ~ 60754871 (-) True abhd6b
TU1594806 other downstream 1947227 60693609 ~ 60694036 (-) True G1396543
TU1594786 other downstream 1977747 60661556 ~ 60663516 (-) False LOC118939463
TU1594716 other downstream 2059228 60554756 ~ 60582035 (-) False G1396467
TU1597246 other upstream 92914 62734743 ~ 62735569 (-) True G1398619
TU1597892 other upstream 557290 63199119 ~ 63292201 (-) True G1399235
TU1598025 other upstream 743020 63384849 ~ 63385262 (-) True G1399367
TU1599309 other upstream 1461541 64103370 ~ 64105039 (-) True G1400503
TU1599365 other upstream 1615097 64256926 ~ 64257433 (-) True G1400552

Expression Profile