RNA id: TU1597214


Basic Information

Item Value
RNA id TU1597214
length 1279
lncRNA type antisense_over
GC content 0.50
exon number 3
gene id G1398587
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 62703952 ~ 62706377 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttgggtggttggagtctaacAACTTTCAGGACATTCCTAACACACCGCCTgttatagatgtcctggatggcagggatctcggccccagtgatgtactgagctgtctgcgccaccctctgtagcgccatgcgatcgagggcagtattatttccataccaggcagtgatgtactgagctgtctgcaccaccctctgtagcgccatgcgatcgagggcagtattatttccataccaggcagtgatgtactgagctgtctgcaccaccctctgtagtcccatgcgatcgagggcagtattatttccataccaggcagtgatgtactgagctgtctgcaccaccctctgtagcgccatgcgatcgagggcagtattatttccataccaggcagtgatgtactgagctcTGTAGCGCCATGTGATCGAGGGCAGTATtatttccataccaggcagtgatgtactgagctgtctgcaccaccctctgtagcgccatgcgatcgagggcagtattatttccataccaggcagtgatgcagccagttaaAATGCTCTCAATGAAAGCAGAGCGAGGGAGAGTTTAACCGACTGAAGGAATGAAAGCAGAGCGAGGGAGAGTTTAACCTACTGAAATAATGAAAGCAGAGCGAGGGAGAGTTTAACCTACTGAAGGAATGAAAGCAAATAGAGGGAGAGTTTGTCCTACTGAGACAGTACAAAGGGGAAGGTGGTCATAGCACAGATAAGAGGGAGTttgtgagagaaagagtgaaagatgAATGTTCTGTAGTTTGGTAGTGTGTGTCGTACTTGGCCACGGCTAGCAGGACGTGTGGGTCGTGTTCACACTTCTTCAGAGCATCAACACTCTTAGTCTTCCTCTGGGGCCGTGCCTCCAGAAACACTGCCTCAGCCCACAGGATAcCTGAGTTGGGGCACTCTTGTAGGGCTTTAGCCATCAGTGTGTTGGCAATGTTCTTCAGCCCTGCCCTGAACTCCAATCTCACCGACTCCAacCATAGGTCTGGGCTCTGTGGGTTCTTGAGGCGTGATTTCTCCAGAATGGATCTGGCCCTGGTCAGCTGGCCAACCCTCTCCTCCAGACGAGACAGCAGCAGCCACAGGGACATGGAGTGGGGACACTTcttcagctacacacacacacacacacacacacacacacacacacacaagatgaaTCAGTGTTAAACACACATAACTGAGCAACATTGAACTCCAGATAGCCTACTGTCGCTCTAGCTATATGAATGTATTCAGATATCTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1597215 lncRNA downstream 4596 62698702 ~ 62699356 (-) True G1398588
TU1597182 lncRNA downstream 62123 62641263 ~ 62641829 (-) True G1398556
TU1597173 lncRNA downstream 70740 62629015 ~ 62633212 (-) True G1398549
TU1597087 lncRNA downstream 125460 62565024 ~ 62578492 (-) False G1398486
TU1597238 lncRNA upstream 22711 62729088 ~ 62729336 (-) True G1398611
TU1597244 lncRNA upstream 27471 62733848 ~ 62734113 (-) True G1398617
TU1597247 lncRNA upstream 30702 62737079 ~ 62737426 (-) True G1398620
TU1597250 lncRNA upstream 31903 62738280 ~ 62738586 (-) True G1398623
TU1597255 lncRNA upstream 37095 62743472 ~ 62743715 (-) True G1398628
XM_036947529.1 mRNA downstream 38446 62469950 ~ 62665506 (-) True LOC118939569
XM_036947525.1 mRNA downstream 244468 62387428 ~ 62459484 (-) False LOC110492495
XM_036947526.1 mRNA downstream 244468 62387428 ~ 62459484 (-) False LOC110492495
XM_036947527.1 mRNA downstream 244468 62387428 ~ 62459484 (-) True LOC110492495
XM_036947528.1 mRNA downstream 266821 62387428 ~ 62437131 (-) False LOC110492495
XM_036947534.1 mRNA upstream 253588 62959965 ~ 62990979 (-) False b4galt5
XM_036947533.1 mRNA upstream 253588 62959965 ~ 63008499 (-) True b4galt5
XM_021566909.2 mRNA upstream 718534 63424911 ~ 63429479 (-) False LOC110492520
XM_021566908.2 mRNA upstream 718534 63424911 ~ 63429527 (-) True LOC110492520
XM_036947536.1 mRNA upstream 1357873 64064250 ~ 64081609 (-) True LOC110492523
TU1594840 other downstream 1949081 60753105 ~ 60754871 (-) True abhd6b
TU1594806 other downstream 2009916 60693609 ~ 60694036 (-) True G1396543
TU1594786 other downstream 2040436 60661556 ~ 60663516 (-) False LOC118939463
TU1594716 other downstream 2121917 60554756 ~ 60582035 (-) False G1396467
TU1597246 other upstream 28366 62734743 ~ 62735569 (-) True G1398619
TU1597892 other upstream 492742 63199119 ~ 63292201 (-) True G1399235
TU1598025 other upstream 678472 63384849 ~ 63385262 (-) True G1399367
TU1599309 other upstream 1396993 64103370 ~ 64105039 (-) True G1400503
TU1599365 other upstream 1550549 64256926 ~ 64257433 (-) True G1400552

Expression Profile