RNA id: TU1597299


Basic Information

Item Value
RNA id TU1597299
length 495
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G1398671
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 62777040 ~ 62777534 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTCAAATTTCAGTCTATAgatatttgtaattatgttctggctcCCCAAGCAGTATGGGACATCATATGTTAATTTCCCAAGACCACAGTTCATCAATAGTTCAGCCACTAGGAGATAGTGATGTGATGTTTACCTTGTAGTGTTTGACTCACATGCATACAGACAGAGCCATGTTGACCCAGCTGGGTGTTTACTGGGGCAATCCAGGGGTAAACAGGGAACTAACTGAAAGGCCTAGTAATGATGTCAGGCCTGAGATATCAACTCAATGGCTCTCAgctcaaacaacaacaacaacctggtcACAGACCCCATGCTGTAAGTAGTAGTCATGGAAGACGAGACAGGTCAGTGAGTCAATGTGAGACCAGTTCCTCCTTCCAGGGACCCAGCAGTGTGATGTAAGGGCCGGGCTGTTGCATAAAGCCTGCTGGATCCACATGAAAGAGCTAGGCCAGGGCATGGAAATCAGAACTGCTCTGGTGACTTCCACTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1597297 lncRNA downstream 395 62776354 ~ 62776645 (-) True G1398669
TU1597295 lncRNA downstream 1442 62775178 ~ 62775598 (-) True G1398667
TU1597289 lncRNA downstream 3929 62772815 ~ 62773111 (-) True G1398661
TU1597287 lncRNA downstream 5090 62771284 ~ 62771950 (-) True G1398659
TU1597284 lncRNA downstream 6764 62770043 ~ 62770276 (-) True G1398657
TU1597301 lncRNA upstream 633 62778167 ~ 62778497 (-) True G1398673
TU1597304 lncRNA upstream 4560 62782094 ~ 62782387 (-) True G1398676
TU1597310 lncRNA upstream 6715 62784249 ~ 62784484 (-) True G1398682
TU1597320 lncRNA upstream 10704 62788238 ~ 62788444 (-) True G1398691
TU1597321 lncRNA upstream 11772 62789306 ~ 62789563 (-) True G1398692
XM_036947529.1 mRNA downstream 111534 62469950 ~ 62665506 (-) True LOC118939569
XM_036947525.1 mRNA downstream 317556 62387428 ~ 62459484 (-) False LOC110492495
XM_036947526.1 mRNA downstream 317556 62387428 ~ 62459484 (-) False LOC110492495
XM_036947527.1 mRNA downstream 317556 62387428 ~ 62459484 (-) True LOC110492495
XM_036947528.1 mRNA downstream 339909 62387428 ~ 62437131 (-) False LOC110492495
XM_036947534.1 mRNA upstream 182431 62959965 ~ 62990979 (-) False b4galt5
XM_036947533.1 mRNA upstream 182431 62959965 ~ 63008499 (-) True b4galt5
XM_021566909.2 mRNA upstream 647377 63424911 ~ 63429479 (-) False LOC110492520
XM_021566908.2 mRNA upstream 647377 63424911 ~ 63429527 (-) True LOC110492520
XM_036947536.1 mRNA upstream 1286716 64064250 ~ 64081609 (-) True LOC110492523
TU1597246 other downstream 41471 62734743 ~ 62735569 (-) True G1398619
TU1594840 other downstream 2022169 60753105 ~ 60754871 (-) True abhd6b
TU1594806 other downstream 2083004 60693609 ~ 60694036 (-) True G1396543
TU1594786 other downstream 2113524 60661556 ~ 60663516 (-) False LOC118939463
TU1594714 other downstream 2195005 60557038 ~ 60582035 (-) True G1396467
TU1597892 other upstream 421585 63199119 ~ 63292201 (-) True G1399235
TU1598025 other upstream 607315 63384849 ~ 63385262 (-) True G1399367
TU1599309 other upstream 1325836 64103370 ~ 64105039 (-) True G1400503
TU1599365 other upstream 1479392 64256926 ~ 64257433 (-) True G1400552
TU1599377 other upstream 1506673 64284207 ~ 64284547 (-) True G1400564

Expression Profile