RNA id: TU1599354


Basic Information

Item Value
RNA id TU1599354
length 499
lncRNA type intronic
GC content 0.48
exon number 2
gene id G1400542
representative False

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 64208995 ~ 64210202 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gactcactaaacagagaacatccctggtcatccctactgcctctgatctggaggactcactaaacagagaacatccctggtcatccctactgcctctgatctggcagactcactaaacagagaacatccctggtcatccctactgcctctgatctgacagactcactaaacagagaacatccctggtcatccctactgcctctgatctggcagactcactaaacagagaacatccctggtcatccctactgcctctgatctggcagactcactaaacagagaacatccctactgcctctgatctggaggactcactaaacagagaacatccctactgcctctgatctggaggactcactaaacagagaacatccctactgcctctgatctggaggactcactaaacagagaacatccctggtcatccctactgcctctgatctggaggactcactaaacacaacatgcttagtttgtaaatgatgtctgaatgttaaAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1599328 lncRNA downstream 10697 64128353 ~ 64198298 (-) True G1400517
TU1599339 lncRNA downstream 60879 64147815 ~ 64148116 (-) True G1400528
TU1599305 lncRNA downstream 108259 64100530 ~ 64100736 (-) True G1400500
TU1599304 lncRNA downstream 110461 64098254 ~ 64098534 (-) True G1400499
TU1599300 lncRNA downstream 113380 64095214 ~ 64095615 (-) True G1400495
TU1599318 lncRNA upstream 10660 64220388 ~ 64244660 (-) True LOC110492532
TU1599331 lncRNA upstream 50553 64260281 ~ 64260568 (-) True G1400520
TU1599369 lncRNA upstream 59490 64269218 ~ 64269550 (-) True G1400556
TU1599471 lncRNA upstream 193973 64403701 ~ 64403998 (-) True G1400639
TU1599484 lncRNA upstream 219982 64429710 ~ 64430791 (-) True G1400652
XM_036945795.1 mRNA downstream 8155 64180193 ~ 64200840 (-) True LOC110492529
XM_036947541.1 mRNA downstream 29097 64149331 ~ 64179898 (-) True LOC110492527
XM_036947538.1 mRNA downstream 63331 64107995 ~ 64145664 (-) False plcg1
XM_036947539.1 mRNA downstream 63331 64107995 ~ 64145664 (-) True plcg1
XM_036947537.1 mRNA downstream 63332 64107995 ~ 64145663 (-) False plcg1
XM_021566929.2 mRNA upstream 10656 64220384 ~ 64236499 (-) False LOC110492532
XM_021566931.2 mRNA upstream 10656 64220384 ~ 64236499 (-) False LOC110492532
XM_021566932.2 mRNA upstream 10656 64220384 ~ 64236499 (-) False LOC110492532
XM_021566933.2 mRNA upstream 10656 64220384 ~ 64236499 (-) False LOC110492532
XM_036947544.1 mRNA upstream 10656 64220384 ~ 64236499 (-) False LOC110492532
TU1599309 other downstream 103956 64103370 ~ 64105039 (-) True G1400503
TU1598025 other downstream 823733 63384849 ~ 63385262 (-) True G1399367
TU1597892 other downstream 916794 63199119 ~ 63292201 (-) True G1399235
TU1597246 other downstream 1473426 62734743 ~ 62735569 (-) True G1398619
TU1594840 other downstream 3454124 60753105 ~ 60754871 (-) True abhd6b
TU1599365 other upstream 47198 64256926 ~ 64257433 (-) True G1400552
TU1599377 other upstream 74479 64284207 ~ 64284547 (-) True G1400564
TU1599378 other upstream 75900 64285628 ~ 64285993 (-) True G1400565
TU1599394 other upstream 100155 64309883 ~ 64310456 (-) True G1400578
TU1599433 other upstream 235627 64445355 ~ 64448472 (-) True si:ch211-117c9.5

Expression Profile