RNA id: TU1599511


Basic Information

Item Value
RNA id TU1599511
length 627
lncRNA type intronic
GC content 0.50
exon number 2
gene id G1400676
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 64481856 ~ 64482510 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CACCCAtactgacacagacacactgacacacccaTACTGACACACCCAtactgacacagacacactgacacacccaTACTGACACACCCAtactgacacagacacactgacacacccaTACTGACACACCCAtactgacacagacacactgacacacccaTACTGACACTGACACACCCATACTGACACACCCACACTGACACACCCATACTGACACACCCatactgacacagacacacagccacactgacacagacacacatacacactgacagacacactgatactgacacagagacactgacacagacacactgacacagacacactgacacagccacactgacacagacacagccacaatgacactgacacagacacactgacacagacacactgacacagacagacacactgacacagccacactgacacagacacactgacacagacacactgacacagacacaatgacacagacacactgacacagtcACACTGacacagccacacagacacagccacaATTACACAgccacactgacacagacacactgacacagtcACACTGACACAGCCACACTGACATAGACACACTGACACAGTCACAAACTCCTACTTTATGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1599504 lncRNA downstream 12356 64469061 ~ 64469500 (-) True G1400670
TU1599489 lncRNA downstream 31661 64449402 ~ 64450195 (-) True G1400655
TU1599484 lncRNA downstream 51065 64429710 ~ 64430791 (-) True G1400652
TU1599471 lncRNA downstream 77858 64403701 ~ 64403998 (-) True G1400639
TU1599369 lncRNA downstream 212306 64269218 ~ 64269550 (-) True G1400556
TU1599438 lncRNA upstream 4359 64486869 ~ 64488384 (-) True G1400619
TU1599536 lncRNA upstream 57242 64539752 ~ 64540851 (-) True G1400699
TU1599553 lncRNA upstream 82335 64564845 ~ 64567234 (-) True G1400714
TU1599554 lncRNA upstream 83995 64566505 ~ 64571927 (-) True G1400715
TU1599581 lncRNA upstream 116443 64598953 ~ 64599608 (-) True G1400730
XM_036947545.1 mRNA downstream 84447 64391628 ~ 64397409 (-) True LOC110492537
XM_021566940.2 mRNA downstream 90518 64348245 ~ 64391338 (-) True LOC110492536
XM_021566938.2 mRNA downstream 139581 64316220 ~ 64342275 (-) True LOC110492535
XM_021566937.2 mRNA downstream 139606 64316220 ~ 64342250 (-) False LOC110492535
XM_036947544.1 mRNA downstream 245357 64220384 ~ 64236499 (-) False LOC110492532
XM_021566944.2 mRNA upstream 8873 64491383 ~ 64514012 (-) True LOC110492541
NM_001124225.1 mRNA upstream 162891 64645401 ~ 64650567 (-) True parapinopsina
XM_036947558.1 mRNA upstream 171280 64653790 ~ 64666518 (-) True LOC110492546
XM_021566947.2 mRNA upstream 184214 64666724 ~ 64673620 (-) False LOC110492543
XM_036947557.1 mRNA upstream 189260 64671770 ~ 64673620 (-) True LOC110492543
TU1599433 other downstream 33384 64445355 ~ 64448472 (-) True si:ch211-117c9.5
TU1599394 other downstream 171400 64309883 ~ 64310456 (-) True G1400578
TU1599378 other downstream 195863 64285628 ~ 64285993 (-) True G1400565
TU1599377 other downstream 197309 64284207 ~ 64284547 (-) True G1400564
TU1599365 other downstream 224423 64256926 ~ 64257433 (-) True G1400552
TU1600638 other upstream 1152972 65635482 ~ 65636372 (-) True G1401617
TU1600365 other upstream 1237997 65720507 ~ 65754610 (-) True LOC110492562
TU1601912 other upstream 1943041 66425551 ~ 66426322 (-) False G1402686
TU1601915 other upstream 1943041 66425551 ~ 66426322 (-) True G1402686
TU1601943 other upstream 2002391 66484901 ~ 66494667 (-) False G1402707

Expression Profile