RNA id: TU1599554


Basic Information

Item Value
RNA id TU1599554
length 231
lncRNA type intronic
GC content 0.48
exon number 2
gene id G1400715
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 64566505 ~ 64571927 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cctcctctttctctctctgtctggaggtcaactgttaaacctcctctttctctctctgtctggaggtcaTCTGgtaaacctcctctttctctctctgtctggaggtcaactgttaaaccccctctttctctctctgtctggagagcaactgttaaacctcctctttctctctctgtctggaggtcaactgtttaacctcctctttctctctctgtctggaggtcaactgtt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1599536 lncRNA downstream 25654 64539752 ~ 64540851 (-) True G1400699
TU1599438 lncRNA downstream 78121 64486869 ~ 64488384 (-) True G1400619
TU1599511 lncRNA downstream 83995 64481856 ~ 64482510 (-) True G1400676
TU1599504 lncRNA downstream 97005 64469061 ~ 64469500 (-) True G1400670
TU1599489 lncRNA downstream 116310 64449402 ~ 64450195 (-) True G1400655
TU1599581 lncRNA upstream 27026 64598953 ~ 64599608 (-) True G1400730
TU1599570 lncRNA upstream 71378 64643305 ~ 64691411 (-) False G1400721
TU1599571 lncRNA upstream 71378 64643305 ~ 64645186 (-) False G1400721
TU1599561 lncRNA upstream 71475 64643402 ~ 64645186 (-) False G1400721
TU1599566 lncRNA upstream 71475 64643402 ~ 64645186 (-) False G1400721
XM_021566944.2 mRNA downstream 52493 64491383 ~ 64514012 (-) True LOC110492541
XM_036947549.1 mRNA downstream 80867 64446798 ~ 64485638 (-) False si:ch211-117c9.5
XM_036947545.1 mRNA downstream 169096 64391628 ~ 64397409 (-) True LOC110492537
XM_021566940.2 mRNA downstream 175167 64348245 ~ 64391338 (-) True LOC110492536
XM_021566938.2 mRNA downstream 224230 64316220 ~ 64342275 (-) True LOC110492535
NM_001124225.1 mRNA upstream 73474 64645401 ~ 64650567 (-) True parapinopsina
XM_036947558.1 mRNA upstream 81863 64653790 ~ 64666518 (-) True LOC110492546
XM_021566947.2 mRNA upstream 94797 64666724 ~ 64673620 (-) False LOC110492543
XM_036947557.1 mRNA upstream 99843 64671770 ~ 64673620 (-) True LOC110492543
XM_021566948.2 mRNA upstream 110691 64682618 ~ 64688581 (-) True LOC110492544
TU1599433 other downstream 118033 64445355 ~ 64448472 (-) True si:ch211-117c9.5
TU1599394 other downstream 256049 64309883 ~ 64310456 (-) True G1400578
TU1599378 other downstream 280512 64285628 ~ 64285993 (-) True G1400565
TU1599377 other downstream 281958 64284207 ~ 64284547 (-) True G1400564
TU1599365 other downstream 309072 64256926 ~ 64257433 (-) True G1400552
TU1600638 other upstream 1063555 65635482 ~ 65636372 (-) True G1401617
TU1600365 other upstream 1148580 65720507 ~ 65754610 (-) True LOC110492562
TU1601912 other upstream 1853624 66425551 ~ 66426322 (-) False G1402686
TU1601915 other upstream 1853624 66425551 ~ 66426322 (-) True G1402686
TU1601943 other upstream 1912974 66484901 ~ 66494667 (-) False G1402707

Expression Profile