RNA id: TU1599570


Basic Information

Item Value
RNA id TU1599570
length 539
lncRNA type read_through
GC content 0.48
exon number 3
gene id G1400721
representative False

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 64643305 ~ 64691411 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tattaacttaagggggctgaaCGCGTTGCCAACGTTGGTGATGATGTGACTGTGGACCAGGTTGGTGTCTGCCTGGAAGGGCCCGGTGTTGCCGTAGCCCTCATTGTCCTGGATACTAGGTCGCAGGGCAGCTGAGAAGGCCACATCTACAACAGTTGCATGACTTTCTCAAGTCCTCAACCTCCCTCCTCAGGTTCCCCACCTCGGCAGACAGGCCAGAGAAAAGGGTAATGAAAGGGTCACGGCTGTAATCAGAGATGGATTGCTTGTTGGTGGAATCATCTGCCTGTCCATAAGACAGACAAATGATCACAATCAGCTGGAGAGGAAGCAtcgtcttcttcgtcttcttcatCATTGTCTTCATCTGGACCTGCAAGAGTCTGTGGAGTTGGGTAGTTCCAAGGACTTGTTTATAAAGGGTGAGGTCATGTGACCAAAGTAAAGGACTTATTAGGAATTACATGTTGAGTGTGGAAAttagaaatacattttaactgGGACTATTCCTGCCCTCTGTACAAACACATTTGTTGGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1599581 lncRNA downstream 43697 64598953 ~ 64599608 (-) True G1400730
TU1599554 lncRNA downstream 71378 64566505 ~ 64571927 (-) True G1400715
TU1599553 lncRNA downstream 76071 64564845 ~ 64567234 (-) True G1400714
TU1599536 lncRNA downstream 102454 64539752 ~ 64540851 (-) True G1400699
TU1599438 lncRNA downstream 154921 64486869 ~ 64488384 (-) True G1400619
TU1599722 lncRNA upstream 162772 64854183 ~ 64854726 (-) True G1400851
TU1599738 lncRNA upstream 194117 64885528 ~ 64886033 (-) True G1400867
TU1599754 lncRNA upstream 215485 64906896 ~ 64907557 (-) True G1400877
TU1599792 lncRNA upstream 263187 64954598 ~ 64955910 (-) True G1400904
TU1599802 lncRNA upstream 275215 64966626 ~ 64972606 (-) False G1400907
XM_021566944.2 mRNA downstream 129293 64491383 ~ 64514012 (-) True LOC110492541
XM_036947549.1 mRNA downstream 157667 64446798 ~ 64485638 (-) False si:ch211-117c9.5
XM_036947545.1 mRNA downstream 245896 64391628 ~ 64397409 (-) True LOC110492537
XM_021566940.2 mRNA downstream 251967 64348245 ~ 64391338 (-) True LOC110492536
XM_021566938.2 mRNA downstream 301030 64316220 ~ 64342275 (-) True LOC110492535
XM_021566949.2 mRNA upstream 292851 64984262 ~ 64991471 (-) True LOC110492545
XM_036947560.1 mRNA upstream 403378 65094789 ~ 65129767 (-) True wnt5a
XM_036947561.1 mRNA upstream 440239 65131650 ~ 65620292 (-) False LOC110518541
NM_001129991.2 mRNA upstream 931764 65623175 ~ 65628493 (-) True tlr9
XM_021566961.2 mRNA upstream 941719 65633130 ~ 65644141 (-) False apeh
TU1599433 other downstream 194833 64445355 ~ 64448472 (-) True si:ch211-117c9.5
TU1599394 other downstream 332849 64309883 ~ 64310456 (-) True G1400578
TU1599378 other downstream 357312 64285628 ~ 64285993 (-) True G1400565
TU1599377 other downstream 358758 64284207 ~ 64284547 (-) True G1400564
TU1599365 other downstream 385872 64256926 ~ 64257433 (-) True G1400552
TU1600638 other upstream 944071 65635482 ~ 65636372 (-) True G1401617
TU1600365 other upstream 1029096 65720507 ~ 65754610 (-) True LOC110492562
TU1601912 other upstream 1734140 66425551 ~ 66426322 (-) False G1402686
TU1601915 other upstream 1734140 66425551 ~ 66426322 (-) True G1402686
TU1601943 other upstream 1793490 66484901 ~ 66494667 (-) False G1402707

Expression Profile