RNA id: TU1599562


Basic Information

Item Value
RNA id TU1599562
length 799
lncRNA type antisense_over
GC content 0.50
exon number 3
gene id G1400721
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 64643305 ~ 64691411 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTGCTGTTTTTAACATTGCTTTTATTGCCTCACACACATGTAAATGACAGCAAAAGAGATTATAATGTGTGGAAGTTAAGTGGAGAACCCTCCCAACCTACACCCTGACCCCCTCAGTCTCTCAGACGTTTTCTCCTTCAACCTGGAAGAGAAGGAAGCCACTGAAGGTGCTAAGGTTTTTGAAAGCATTACTGGTCACCTGGAAACTAGACGGTAGGACCAGGTAAACGATGTCTCCTTTGGCCAGCTGCAGGGTGGCCCCGTTGGACGCAAAGTCTTCATTGTCCCCCTTGTCCTGAAACTCATAGACCAGAGCTACCTGCTCTTGGTTCTTGTAAAGGGCCACACCGATGCTGGCCTCCTTTTTCCAGGCATAGGAGGTGAAAGTGAAGTAGTAGACTCCATGTACTGGTGCTGTGAATGCTCCTGTCCGGGGGCTGAACGCGTTGCCAACGTTGGTGATGATGTGACTGTGGACCAGGTTGGTGTCTGCCTGGAAGGGCCCGGTGTTGCCGTAGCCCTCATTGTCCTGGATACTAGGTCGCAGGGCAGCTGAGAAGGCCACATCTACAGAGTTGCATGACTTTCTCAAGTCCTCAACCTCCCTCCTCAGGTTCCCCACCTCGGCAGACAGGCCAGAGAAAAGGGTAATGAAAGGGTCACGGCTGTAATCAGAGATGGATTGCTTGTTGGTGGAATCATCTGCCTGTCCATAAGACAGACAAATGATCACAATCAGCTGGAGAGGAAGCAtcgtcttcttcgtcttcttcatCATTGTCTTCATCTGGACCTGCA

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1599581 lncRNA downstream 43858 64598953 ~ 64599608 (-) True G1400730
TU1599554 lncRNA downstream 71539 64566505 ~ 64571927 (-) True G1400715
TU1599553 lncRNA downstream 76232 64564845 ~ 64567234 (-) True G1400714
TU1599536 lncRNA downstream 102615 64539752 ~ 64540851 (-) True G1400699
TU1599438 lncRNA downstream 155082 64486869 ~ 64488384 (-) True G1400619
TU1599722 lncRNA upstream 208997 64854183 ~ 64854726 (-) True G1400851
TU1599738 lncRNA upstream 240342 64885528 ~ 64886033 (-) True G1400867
TU1599754 lncRNA upstream 261710 64906896 ~ 64907557 (-) True G1400877
TU1599792 lncRNA upstream 309412 64954598 ~ 64955910 (-) True G1400904
TU1599802 lncRNA upstream 321440 64966626 ~ 64972606 (-) False G1400907
XM_021566944.2 mRNA downstream 129454 64491383 ~ 64514012 (-) True LOC110492541
XM_036947549.1 mRNA downstream 157828 64446798 ~ 64485638 (-) False si:ch211-117c9.5
XM_036947545.1 mRNA downstream 246057 64391628 ~ 64397409 (-) True LOC110492537
XM_021566940.2 mRNA downstream 252128 64348245 ~ 64391338 (-) True LOC110492536
XM_021566938.2 mRNA downstream 301191 64316220 ~ 64342275 (-) True LOC110492535
NM_001124225.1 mRNA upstream 215 64645401 ~ 64650567 (-) True parapinopsina
XM_036947558.1 mRNA upstream 8604 64653790 ~ 64666518 (-) True LOC110492546
XM_021566947.2 mRNA upstream 21538 64666724 ~ 64673620 (-) False LOC110492543
XM_036947557.1 mRNA upstream 26584 64671770 ~ 64673620 (-) True LOC110492543
XM_021566948.2 mRNA upstream 37432 64682618 ~ 64688581 (-) True LOC110492544
TU1599433 other downstream 194994 64445355 ~ 64448472 (-) True si:ch211-117c9.5
TU1599394 other downstream 333010 64309883 ~ 64310456 (-) True G1400578
TU1599378 other downstream 357473 64285628 ~ 64285993 (-) True G1400565
TU1599377 other downstream 358919 64284207 ~ 64284547 (-) True G1400564
TU1599365 other downstream 386033 64256926 ~ 64257433 (-) True G1400552
TU1600638 other upstream 990296 65635482 ~ 65636372 (-) True G1401617
TU1600365 other upstream 1075321 65720507 ~ 65754610 (-) True LOC110492562
TU1601912 other upstream 1780365 66425551 ~ 66426322 (-) False G1402686
TU1601915 other upstream 1780365 66425551 ~ 66426322 (-) True G1402686
TU1601943 other upstream 1839715 66484901 ~ 66494667 (-) False G1402707

Expression Profile