RNA id: TU1599802


Basic Information

Item Value
RNA id TU1599802
length 333
lncRNA type intronic
GC content 0.37
exon number 2
gene id G1400907
representative False

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 64966626 ~ 64972606 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ataatagacagtaacagcagtatactgtaggtaggggtaaagtgactagacaactggatagataatagacagtaacagcagtatactgtaggtagggataaaggatagataatagacagtagcagtatactgtaggtaggggtaaagtgactagacaacaggatagataatagacagtaacagcagtatactgtaggtagggataaaggatagataatagacagtaacagcagtatactgtaggtagggataaaggatagataatagacagcaacagcagtatactgtaggtaggggtaaaggatagataatagacagtaacagtagtatact

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1599792 lncRNA downstream 10716 64954598 ~ 64955910 (-) True G1400904
TU1599754 lncRNA downstream 59069 64906896 ~ 64907557 (-) True G1400877
TU1599738 lncRNA downstream 80593 64885528 ~ 64886033 (-) True G1400867
TU1599722 lncRNA downstream 111900 64854183 ~ 64854726 (-) True G1400851
TU1599567 lncRNA downstream 321440 64643402 ~ 64645186 (-) False G1400721
TU1599832 lncRNA upstream 65694 65038300 ~ 65038731 (-) True G1400933
TU1599841 lncRNA upstream 83980 65056586 ~ 65056808 (-) True G1400942
TU1599845 lncRNA upstream 86047 65058653 ~ 65058890 (-) True G1400946
TU1599852 lncRNA upstream 90210 65062816 ~ 65063036 (-) True G1400953
TU1599861 lncRNA upstream 100595 65073201 ~ 65073430 (-) True G1400962
XM_021566948.2 mRNA downstream 278045 64682618 ~ 64688581 (-) True LOC110492544
XM_021566947.2 mRNA downstream 293006 64666724 ~ 64673620 (-) False LOC110492543
XM_036947557.1 mRNA downstream 293006 64671770 ~ 64673620 (-) True LOC110492543
XM_036947558.1 mRNA downstream 300108 64653790 ~ 64666518 (-) True LOC110492546
NM_001124225.1 mRNA downstream 316059 64645401 ~ 64650567 (-) True parapinopsina
XM_021566949.2 mRNA upstream 11656 64984262 ~ 64991471 (-) True LOC110492545
XM_036947560.1 mRNA upstream 122183 65094789 ~ 65129767 (-) True wnt5a
XM_036947561.1 mRNA upstream 159044 65131650 ~ 65620292 (-) False LOC110518541
NM_001129991.2 mRNA upstream 650569 65623175 ~ 65628493 (-) True tlr9
XM_021566961.2 mRNA upstream 660524 65633130 ~ 65644141 (-) False apeh
TU1599433 other downstream 518154 64445355 ~ 64448472 (-) True si:ch211-117c9.5
TU1599394 other downstream 656170 64309883 ~ 64310456 (-) True G1400578
TU1599378 other downstream 680633 64285628 ~ 64285993 (-) True G1400565
TU1599377 other downstream 682079 64284207 ~ 64284547 (-) True G1400564
TU1599365 other downstream 709193 64256926 ~ 64257433 (-) True G1400552
TU1600638 other upstream 662876 65635482 ~ 65636372 (-) True G1401617
TU1600365 other upstream 747901 65720507 ~ 65754610 (-) True LOC110492562
TU1601912 other upstream 1452945 66425551 ~ 66426322 (-) False G1402686
TU1601915 other upstream 1452945 66425551 ~ 66426322 (-) True G1402686
TU1601943 other upstream 1512295 66484901 ~ 66494667 (-) False G1402707

Expression Profile