RNA id: TU1599841



Basic Information


Item Value
RNA id TU1599841
length 223
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G1400942
representative True

Chromosome Information


Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 65056586 ~ 65056808 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GCCTGttcggaagcaagacgtcggtgtctgcGGCGTGGTTAGTTTTCCTTtcataatccgtgattgtctgtagaccctgccacatacgtctcttGTCTGAGCCATTGAACTGGGACTCATctttgtccctataccgacaTTTAGCCTGCTTGATTGCTTTGCAGAGGGAATAACTCCACCGTTTGTATTCTTCCATATTCCCAGTCTTCTTGGCCTGGTTATA

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU1599832 lncRNA downstream 17855 65038300 ~ 65038731 (-) True G1400933
TU1599802 lncRNA downstream 83980 64966626 ~ 64972606 (-) False G1400907
TU1599800 lncRNA downstream 87868 64967837 ~ 64968718 (-) True G1400907
TU1599792 lncRNA downstream 100676 64954598 ~ 64955910 (-) True G1400904
TU1599754 lncRNA downstream 149029 64906896 ~ 64907557 (-) True G1400877
TU1599845 lncRNA upstream 1845 65058653 ~ 65058890 (-) True G1400946
TU1599852 lncRNA upstream 6008 65062816 ~ 65063036 (-) True G1400953
TU1599861 lncRNA upstream 16393 65073201 ~ 65073430 (-) True G1400962
TU1599877 lncRNA upstream 25396 65082204 ~ 65082623 (-) True G1400978
TU1599889 lncRNA upstream 36675 65093483 ~ 65094258 (-) True G1400990
XM_021566949.2 mRNA downstream 65115 64984262 ~ 64991471 (-) True LOC110492545
XM_021566948.2 mRNA downstream 368005 64682618 ~ 64688581 (-) True LOC110492544
XM_021566947.2 mRNA downstream 382966 64666724 ~ 64673620 (-) False LOC110492543
XM_036947557.1 mRNA downstream 382966 64671770 ~ 64673620 (-) True LOC110492543
XM_036947558.1 mRNA downstream 390068 64653790 ~ 64666518 (-) True LOC110492546
XM_036947560.1 mRNA upstream 37981 65094789 ~ 65129767 (-) True wnt5a
XM_036947561.1 mRNA upstream 74842 65131650 ~ 65620292 (-) False LOC110518541
NM_001129991.2 mRNA upstream 566367 65623175 ~ 65628493 (-) True tlr9
XM_021566961.2 mRNA upstream 576322 65633130 ~ 65644141 (-) False apeh
XM_021566962.2 mRNA upstream 576322 65633130 ~ 65644141 (-) True apeh
TU1599433 other downstream 608114 64445355 ~ 64448472 (-) True si:ch211-117c9.5
TU1599394 other downstream 746130 64309883 ~ 64310456 (-) True G1400578
TU1599378 other downstream 770593 64285628 ~ 64285993 (-) True G1400565
TU1599377 other downstream 772039 64284207 ~ 64284547 (-) True G1400564
TU1599365 other downstream 799153 64256926 ~ 64257433 (-) True G1400552
TU1600638 other upstream 578674 65635482 ~ 65636372 (-) True G1401617
TU1600365 other upstream 663699 65720507 ~ 65754610 (-) True LOC110492562
TU1601912 other upstream 1368743 66425551 ~ 66426322 (-) False G1402686
TU1601915 other upstream 1368743 66425551 ~ 66426322 (-) True G1402686
TU1601943 other upstream 1428093 66484901 ~ 66494667 (-) False G1402707

Expression Profile


TU1599841 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 4.
End of interactive chart.

TU1599841 Expression in each Bioproject

Bar chart with 10 bars.
TU1599841 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 60.
End of interactive chart.