RNA id: TU1599962


Basic Information

Item Value
RNA id TU1599962
length 400
lncRNA type intronic
GC content 0.47
exon number 1
gene id G1401045
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 65206108 ~ 65206507 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cattaaacagacacagtctctctctcctggatcattaaacagacacagcctctctctcctggatcattaaacagacacagcctctcactcctggatcattaaacagactcagcctctctctcctggatcataaaACAGACAGCCTCGCTCTCCTGGATCAtaaaacagacacagcctctctctcctccaccttcataaaacagacacagcctctctctcctggatcattaaacagactcagcctctctctcctggatcattaaacagactcagcctctctctcctggatcattaaacagacacagcctctctctcctggatcataaaacagacacagcctctctctcctggatcataaaacagacagcctctctctcctggatcattaaacagacacagc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1599961 lncRNA upstream 5878 65199800 ~ 65200230 (+) True G1401044
TU1599952 lncRNA upstream 24012 65181853 ~ 65182096 (+) True G1401035
TU1599949 lncRNA upstream 42757 65161145 ~ 65163351 (+) True G1401034
TU1599942 lncRNA upstream 53076 65152791 ~ 65153032 (+) True G1401027
TU1599941 lncRNA upstream 53364 65152472 ~ 65152744 (+) True G1401026
TU1599966 lncRNA downstream 7160 65213667 ~ 65214042 (+) True G1401049
TU1599967 lncRNA downstream 8246 65214753 ~ 65214978 (+) True G1401050
TU1599976 lncRNA downstream 23746 65230253 ~ 65230481 (+) True G1401059
TU1599977 lncRNA downstream 26594 65233101 ~ 65233312 (+) True G1401060
TU1599979 lncRNA downstream 28392 65234899 ~ 65235176 (+) True G1401062
XM_036947559.1 mRNA upstream 169825 64722542 ~ 65036283 (+) False cacna2d3a
XR_005036581.1 mRNA upstream 532276 64670768 ~ 64673832 (+) False LOC110492553
XR_005036582.1 mRNA upstream 532276 64670770 ~ 64673832 (+) False LOC110492553
XM_021566951.2 mRNA upstream 560927 64630443 ~ 64645181 (+) True LOC100136613
XM_036947555.1 mRNA upstream 583640 64575984 ~ 64622468 (+) True LOC110519666
XM_021566963.2 mRNA downstream 441849 65648356 ~ 65653937 (+) True capza1b
XM_036947565.1 mRNA downstream 789520 65996027 ~ 66265099 (+) False LOC110492564
XM_036947566.1 mRNA downstream 789520 65996027 ~ 66265099 (+) False LOC110492564
XM_036947578.1 mRNA downstream 1217382 66423889 ~ 66434911 (+) False srpk3
XM_036947574.1 mRNA downstream 1217432 66423939 ~ 66434911 (+) False srpk3
TU1599958 other upstream 15833 65189990 ~ 65190275 (+) True G1401041
TU1598933 other upstream 731820 64473548 ~ 64474288 (+) False G1400202
TU1598810 other upstream 958406 64247297 ~ 64247702 (+) True G1400095
TU1598754 other upstream 979667 64224773 ~ 64226441 (+) True G1400047
TU1598763 other upstream 1026653 64166374 ~ 64179455 (+) True G1400056
TU1599991 other downstream 52008 65258515 ~ 65258844 (+) True G1401074
TU1600332 other downstream 689384 65895891 ~ 65897063 (+) True G1401354
TU1600817 other downstream 812494 66019001 ~ 66024245 (+) True G1401782
TU1601182 other downstream 1336804 66543311 ~ 66543685 (+) True G1402066
TU1601384 other downstream 1707858 66914365 ~ 66914716 (+) True G1402256

Expression Profile