RNA id: TU1599967


Basic Information

Item Value
RNA id TU1599967
length 226
lncRNA type intronic
GC content 0.42
exon number 1
gene id G1401050
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 65214753 ~ 65214978 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cccaGAGCTAAGGCCATAGCGTAGGGGCGTCTGCTGCACTCTATACCCCCATAGAAGAGCTGACTATAACATGCAGTTACTCACTGAAGCTTCTTTCTTCCTTTTTGAAAAtacactctcagaaaaaaagAGTGCTATTttaaaccaattgtcccggtagGAGAACCATCTGATAGAACTCTTTTCAGATCATATAGAACCTCTGGTTACAAAGAGAACCATTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1599966 lncRNA upstream 711 65213667 ~ 65214042 (+) True G1401049
TU1599962 lncRNA upstream 8246 65206108 ~ 65206507 (+) True G1401045
TU1599961 lncRNA upstream 14523 65199800 ~ 65200230 (+) True G1401044
TU1599952 lncRNA upstream 32657 65181853 ~ 65182096 (+) True G1401035
TU1599949 lncRNA upstream 51402 65161145 ~ 65163351 (+) True G1401034
TU1599976 lncRNA downstream 15275 65230253 ~ 65230481 (+) True G1401059
TU1599977 lncRNA downstream 18123 65233101 ~ 65233312 (+) True G1401060
TU1599979 lncRNA downstream 19921 65234899 ~ 65235176 (+) True G1401062
TU1599982 lncRNA downstream 25164 65240142 ~ 65240361 (+) True G1401065
TU1599985 lncRNA downstream 27740 65242718 ~ 65242957 (+) True G1401068
XM_036947559.1 mRNA upstream 178470 64722542 ~ 65036283 (+) False cacna2d3a
XR_005036581.1 mRNA upstream 540921 64670768 ~ 64673832 (+) False LOC110492553
XR_005036582.1 mRNA upstream 540921 64670770 ~ 64673832 (+) False LOC110492553
XM_021566951.2 mRNA upstream 569572 64630443 ~ 64645181 (+) True LOC100136613
XM_036947555.1 mRNA upstream 592285 64575984 ~ 64622468 (+) True LOC110519666
XM_021566963.2 mRNA downstream 433378 65648356 ~ 65653937 (+) True capza1b
XM_036947565.1 mRNA downstream 781049 65996027 ~ 66265099 (+) False LOC110492564
XM_036947566.1 mRNA downstream 781049 65996027 ~ 66265099 (+) False LOC110492564
XM_036947578.1 mRNA downstream 1208911 66423889 ~ 66434911 (+) False srpk3
XM_036947574.1 mRNA downstream 1208961 66423939 ~ 66434911 (+) False srpk3
TU1599958 other upstream 24478 65189990 ~ 65190275 (+) True G1401041
TU1598933 other upstream 740465 64473548 ~ 64474288 (+) False G1400202
TU1598810 other upstream 967051 64247297 ~ 64247702 (+) True G1400095
TU1598754 other upstream 988312 64224773 ~ 64226441 (+) True G1400047
TU1598763 other upstream 1035298 64166374 ~ 64179455 (+) True G1400056
TU1599991 other downstream 43537 65258515 ~ 65258844 (+) True G1401074
TU1600332 other downstream 680913 65895891 ~ 65897063 (+) True G1401354
TU1600817 other downstream 804023 66019001 ~ 66024245 (+) True G1401782
TU1601182 other downstream 1328333 66543311 ~ 66543685 (+) True G1402066
TU1601384 other downstream 1699387 66914365 ~ 66914716 (+) True G1402256

Expression Profile