RNA id: TU1599989


Basic Information

Item Value
RNA id TU1599989
length 223
lncRNA type antisense_over
GC content 0.53
exon number 1
gene id G1401072
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 65256269 ~ 65256491 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGGTCCATTGGGGCTCTGTGGTTGGCGTGGGGTGGTCCTCTTGCAGGGGTCCGGTGGTGTGGGTGAGCAGGGTGAGCCGGGTGTACCCCCGGGTGGgggtggtgaggatgatgagggTGTAGATGTTCTTCATCATAGTTGTCTGCTATGAGCTTCATCCTACTCTGGGTCTGGAGGAGAACATTTACAATTTATAGCGTGTTTTGCATTTATCAATCTCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1599985 lncRNA upstream 13312 65242718 ~ 65242957 (+) True G1401068
TU1599982 lncRNA upstream 15908 65240142 ~ 65240361 (+) True G1401065
TU1599979 lncRNA upstream 21093 65234899 ~ 65235176 (+) True G1401062
TU1599977 lncRNA upstream 22957 65233101 ~ 65233312 (+) True G1401060
TU1599976 lncRNA upstream 25788 65230253 ~ 65230481 (+) True G1401059
TU1599990 lncRNA downstream 1308 65257799 ~ 65258022 (+) True G1401073
TU1599996 lncRNA downstream 12046 65268537 ~ 65268741 (+) True G1401079
TU1599998 lncRNA downstream 14929 65271420 ~ 65271662 (+) True G1401081
TU1600035 lncRNA downstream 91500 65347991 ~ 65348387 (+) True G1401117
TU1600070 lncRNA downstream 166517 65423008 ~ 65423887 (+) True G1401149
XM_036947559.1 mRNA upstream 219986 64722542 ~ 65036283 (+) False cacna2d3a
XR_005036581.1 mRNA upstream 582437 64670768 ~ 64673832 (+) False LOC110492553
XR_005036582.1 mRNA upstream 582437 64670770 ~ 64673832 (+) False LOC110492553
XM_021566951.2 mRNA upstream 611088 64630443 ~ 64645181 (+) True LOC100136613
XM_036947555.1 mRNA upstream 633801 64575984 ~ 64622468 (+) True LOC110519666
XM_021566963.2 mRNA downstream 391865 65648356 ~ 65653937 (+) True capza1b
XM_036947565.1 mRNA downstream 739536 65996027 ~ 66265099 (+) False LOC110492564
XM_036947566.1 mRNA downstream 739536 65996027 ~ 66265099 (+) False LOC110492564
XM_036947578.1 mRNA downstream 1167398 66423889 ~ 66434911 (+) False srpk3
XM_036947574.1 mRNA downstream 1167448 66423939 ~ 66434911 (+) False srpk3
TU1599958 other upstream 65994 65189990 ~ 65190275 (+) True G1401041
TU1598933 other upstream 781981 64473548 ~ 64474288 (+) False G1400202
TU1598810 other upstream 1008567 64247297 ~ 64247702 (+) True G1400095
TU1598754 other upstream 1029828 64224773 ~ 64226441 (+) True G1400047
TU1598763 other upstream 1076814 64166374 ~ 64179455 (+) True G1400056
TU1599991 other downstream 2024 65258515 ~ 65258844 (+) True G1401074
TU1600332 other downstream 639400 65895891 ~ 65897063 (+) True G1401354
TU1600817 other downstream 762510 66019001 ~ 66024245 (+) True G1401782
TU1601182 other downstream 1286820 66543311 ~ 66543685 (+) True G1402066
TU1601384 other downstream 1657874 66914365 ~ 66914716 (+) True G1402256

Expression Profile