RNA id: TU1600078


Basic Information

Item Value
RNA id TU1600078
length 303
lncRNA type intronic
GC content 0.43
exon number 1
gene id G1401156
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 65438694 ~ 65438996 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtaggcagacctggctctcaagagaagacagcctatgtgctcactgcccacaaaatgatgtggaaactgagctgcacttcctaacctcctgcccaatgtatgaccatattagagagacagatTTCCCTCAGATttcacagatccacaaagaattcgaaaacaaatccaaatttgataaactcccatatctactgggtgaaataccacagtgtgccatcacagcagcaagatttgtgacctgttgccacgagaaaagggtaaacagtgaagaacaaacaccattgtaaatacaacccatattta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1600070 lncRNA upstream 14807 65423008 ~ 65423887 (+) True G1401149
TU1600035 lncRNA upstream 90307 65347991 ~ 65348387 (+) True G1401117
TU1599998 lncRNA upstream 167032 65271420 ~ 65271662 (+) True G1401081
TU1599996 lncRNA upstream 169953 65268537 ~ 65268741 (+) True G1401079
TU1599990 lncRNA upstream 180672 65257799 ~ 65258022 (+) True G1401073
TU1600080 lncRNA downstream 8489 65447485 ~ 65447842 (+) True G1401158
TU1600086 lncRNA downstream 18201 65457197 ~ 65457506 (+) True G1401164
TU1600111 lncRNA downstream 75412 65514408 ~ 65514638 (+) True G1401185
TU1600114 lncRNA downstream 77319 65516315 ~ 65516518 (+) True G1401188
TU1600135 lncRNA downstream 115915 65554911 ~ 65559728 (+) False G1401206
XM_036947559.1 mRNA upstream 402411 64722542 ~ 65036283 (+) False cacna2d3a
XR_005036581.1 mRNA upstream 764862 64670768 ~ 64673832 (+) False LOC110492553
XR_005036582.1 mRNA upstream 764862 64670770 ~ 64673832 (+) False LOC110492553
XM_021566951.2 mRNA upstream 793513 64630443 ~ 64645181 (+) True LOC100136613
XM_036947555.1 mRNA upstream 816226 64575984 ~ 64622468 (+) True LOC110519666
XM_021566963.2 mRNA downstream 209360 65648356 ~ 65653937 (+) True capza1b
XM_036947565.1 mRNA downstream 557031 65996027 ~ 66265099 (+) False LOC110492564
XM_036947566.1 mRNA downstream 557031 65996027 ~ 66265099 (+) False LOC110492564
XM_036947578.1 mRNA downstream 984893 66423889 ~ 66434911 (+) False srpk3
XM_036947574.1 mRNA downstream 984943 66423939 ~ 66434911 (+) False srpk3
TU1599991 other upstream 179850 65258515 ~ 65258844 (+) True G1401074
TU1599958 other upstream 248419 65189990 ~ 65190275 (+) True G1401041
TU1598933 other upstream 964406 64473548 ~ 64474288 (+) False G1400202
TU1598810 other upstream 1190992 64247297 ~ 64247702 (+) True G1400095
TU1598754 other upstream 1212253 64224773 ~ 64226441 (+) True G1400047
TU1600332 other downstream 456895 65895891 ~ 65897063 (+) True G1401354
TU1600817 other downstream 580005 66019001 ~ 66024245 (+) True G1401782
TU1601182 other downstream 1104315 66543311 ~ 66543685 (+) True G1402066
TU1601384 other downstream 1475369 66914365 ~ 66914716 (+) True G1402256
TU1602610 other downstream 2032948 67471944 ~ 67476876 (+) False LOC110492593

Expression Profile