RNA id: TU1600378


Basic Information

Item Value
RNA id TU1600378
length 525
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G1401383
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 65708625 ~ 65709149 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTGAGCCACGGGACGGGATAAGTTGAGCCACGGGACGGGATAAGTTGAGCCACGGGACGGGATAAGTTGAGCCGCCTACAAATTTCAGTATGGAATGAAATATTACctctacctttttaaaaccatttcTTCATTTCCCAAACAgaattcaacacaatcacaataGCTTTTTTGTCTTTTAATCATTTTATCAATCTTTGAACACAGGCTTAGCACCTAACAAACACGTTGtacacctaacaaacactttaAACATAGTCCAGGCCCTGTTCttacctcatatcccagcaaCAATGGGAGGAAAACACTTAAATCTGCTTAACTTGCCatttgctcaacttaccccatggcatTGGTTCAACTTACCTCACTGCAAACATTTGGACTATTTTATCACAAACAGCTGCAAGGATGCCCTTTCACACTAGGTTTAGGAtctcatattgaagcttatagagaccccaacagatgtatagaacaatcttaaaagtATCTACTTTGGTTTACATACAACCATCATGGAA

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1600654 lncRNA downstream 2664 65705747 ~ 65705961 (-) True G1401632
TU1600371 lncRNA downstream 53770 65654617 ~ 65654855 (-) True G1401378
TU1600368 lncRNA downstream 54691 65648396 ~ 65653934 (-) True G1401376
TU1600630 lncRNA downstream 91380 65616811 ~ 65617245 (-) True G1401611
TU1600623 lncRNA downstream 103733 65604227 ~ 65604892 (-) False G1401606
TU1600363 lncRNA upstream 11358 65720507 ~ 65754363 (-) False LOC110492562
TU1600691 lncRNA upstream 136188 65845337 ~ 65847509 (-) True G1401667
TU1600719 lncRNA upstream 174077 65883226 ~ 65883433 (-) True G1401692
TU1600729 lncRNA upstream 194410 65903559 ~ 65903883 (-) True G1401702
TU1600744 lncRNA upstream 223749 65932898 ~ 65933267 (-) True G1401717
XM_036947562.1 mRNA downstream 3847 65660280 ~ 65704778 (-) True cttnbp2nlb
XM_021566961.2 mRNA downstream 64484 65633130 ~ 65644141 (-) False apeh
XM_021566962.2 mRNA downstream 64484 65633130 ~ 65644141 (-) True apeh
NM_001129991.2 mRNA downstream 80132 65623175 ~ 65628493 (-) True tlr9
XM_036947561.1 mRNA downstream 88333 65131650 ~ 65620292 (-) False LOC110518541
XM_036947564.1 mRNA upstream 6562 65715711 ~ 65740776 (-) False LOC110492562
XM_036947563.1 mRNA upstream 11018 65720167 ~ 65740775 (-) False LOC110492562
XM_021566966.2 mRNA upstream 560488 66269637 ~ 66276483 (-) True ddx20
XM_036947568.1 mRNA upstream 571807 66280956 ~ 66296439 (-) True LOC110492566
XM_021566970.2 mRNA upstream 594440 66303589 ~ 66308067 (-) True b4galt3
TU1600638 other downstream 72253 65635482 ~ 65636372 (-) True G1401617
TU1599433 other downstream 1260153 64445355 ~ 64448472 (-) True si:ch211-117c9.5
TU1599394 other downstream 1398169 64309883 ~ 64310456 (-) True G1400578
TU1599378 other downstream 1422632 64285628 ~ 64285993 (-) True G1400565
TU1599377 other downstream 1424078 64284207 ~ 64284547 (-) True G1400564
TU1600365 other upstream 11358 65720507 ~ 65754610 (-) True LOC110492562
TU1601912 other upstream 716402 66425551 ~ 66426322 (-) False G1402686
TU1601915 other upstream 716402 66425551 ~ 66426322 (-) True G1402686
TU1601943 other upstream 775752 66484901 ~ 66494667 (-) False G1402707
TU1602806 other upstream 1734272 67443421 ~ 67444179 (-) True G1403498

Expression Profile