RNA id: TU1601778


Basic Information

Item Value
RNA id TU1601778
length 613
lncRNA type intronic
GC content 0.46
exon number 1
gene id G1402588
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 66205628 ~ 66206240 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtccagtgtagttccttgagggccgttgaCGCGGAATATACATGACTGTGACtgtaaccgaagagaattctcttgggaggtaatacggtcagcatttgatggtgaggtattctaggttgggtgaacaaaaggacttgagtttctttatgttatcacaatcacaccatgagtagttaatcatgaagcatacaccccacCTTTCTTcctcccggagagttctttattcctgtctgtgcaatgaactgagaacccagctggctgtgtGAACAGGTTCAGGATGTCCTGAACGAGCCATGATTccttgaaacagagtatgttacaatccctgatatctctctggaaggagattctCGTCCTGAGCTCGTCTCCTTTAatgactgaacattagcgagtaatgtACTCGGATGCGGTGGATGGTGTGCCTGCCTCCTGAGACGAACTAGAAGTCCACTctgaatacctcttctccacTGGCGGCGACTCTGAGCAGCCTCTAGGAtgagttcaattgccctggggggtacaaACTAAGGATCCAATTCAgtaaagttgtattcctggttgtaatgctggtgagttaccaccgctctgatatccaaaagttattgtatgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1601775 lncRNA downstream 4125 66201159 ~ 66201503 (-) True G1402585
TU1601736 lncRNA downstream 56654 66148637 ~ 66148974 (-) True G1402550
TU1601675 lncRNA downstream 160228 66045024 ~ 66045400 (-) True G1402492
TU1601668 lncRNA downstream 169744 66035339 ~ 66035884 (-) True G1402485
TU1601620 lncRNA downstream 235714 65969565 ~ 65969914 (-) True G1402442
TU1601794 lncRNA upstream 28013 66234253 ~ 66317716 (-) True G1402604
TU1601814 lncRNA upstream 93406 66299646 ~ 66301517 (-) True G1402620
TU1601865 lncRNA upstream 153201 66359441 ~ 66376840 (-) True G1402659
TU1601888 lncRNA upstream 235974 66442214 ~ 66447716 (-) False cdk16
TU1601872 lncRNA upstream 242504 66448744 ~ 66451848 (-) True cdk16
XM_036947564.1 mRNA downstream 464852 65715711 ~ 65740776 (-) False LOC110492562
XM_036947563.1 mRNA downstream 464853 65720167 ~ 65740775 (-) False LOC110492562
XM_036947562.1 mRNA downstream 500850 65660280 ~ 65704778 (-) True cttnbp2nlb
XM_021566961.2 mRNA downstream 561487 65633130 ~ 65644141 (-) False apeh
XM_021566962.2 mRNA downstream 561487 65633130 ~ 65644141 (-) True apeh
XM_021566966.2 mRNA upstream 63397 66269637 ~ 66276483 (-) True ddx20
XM_036947568.1 mRNA upstream 74716 66280956 ~ 66296439 (-) True LOC110492566
XM_021566970.2 mRNA upstream 97349 66303589 ~ 66308067 (-) True b4galt3
XM_036947569.1 mRNA upstream 114182 66320422 ~ 66332763 (-) False bgnb
XM_036947570.1 mRNA upstream 114182 66320422 ~ 66345643 (-) True bgnb
TU1600365 other downstream 451018 65720507 ~ 65754610 (-) True LOC110492562
TU1600638 other downstream 569256 65635482 ~ 65636372 (-) True G1401617
TU1599433 other downstream 1757156 64445355 ~ 64448472 (-) True si:ch211-117c9.5
TU1599394 other downstream 1895172 64309883 ~ 64310456 (-) True G1400578
TU1599378 other downstream 1919635 64285628 ~ 64285993 (-) True G1400565
TU1601912 other upstream 219311 66425551 ~ 66426322 (-) False G1402686
TU1601915 other upstream 219311 66425551 ~ 66426322 (-) True G1402686
TU1601943 other upstream 278661 66484901 ~ 66494667 (-) False G1402707
TU1602806 other upstream 1237181 67443421 ~ 67444179 (-) True G1403498
TU1604092 other upstream 2584949 68791189 ~ 68795025 (-) True LOC118939478

Expression Profile