RNA id: TU1601912


Basic Information

Item Value
RNA id TU1601912
length 592
RNA type TUCP
GC content 0.56
exon number 3
gene id G1402686
representative False

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 66425551 ~ 66426322 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTCAAATAGAATGACCTTGACCCTCACTTTCCTAATCTGCCACACTATTGCATCGATCCATTAGACAATTATATAGCCTACCTTTGCAGTAATCCGATGGGTCCTCCTGCTCCTCATCATCTGATCCGAGCAGCTCTGTTGGTGGAGGGGTGAAGTCAGGTGGGGGTGGGCTGAGAGCCTGCGGAGAGGTGGTCTGAGATGAGGAGGTCAGTGGTTTAGGTGGAGTAGAGAACAGAATTGGAGGGATCCCTAGTGAGGGTGCTATGGGAGAGGACAGTACGGGGGTGGACAGTACGGGGGTGGACAGTACAGGGGTGGACAGAGTGTCAGAGGAGGGAGTTAGTGGTATAGGAAGTGGCCTGGTGGTTAAAGCGGAAGGACATAAGAGATGGGGAGGGCTCTGGGAGAGGTTGAGTTGGGCAGGGGGTTGGAGGTCCGGGGGCCTCTGGGACAGGTTGAGTGGGGCAGGGGGTTGGAGGTCCGGGGGCCTCTGGGACAGGTTGAGGGCAGGGGTGGGAGAGGTTTTTGGTGGAGTCGCAGGCCTGTGTATTGTGAGGATGCGACACAACTCATCTGCGGTGGGAATCTGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1601865 lncRNA downstream 48711 66359441 ~ 66376840 (-) True G1402659
TU1601794 lncRNA downstream 107835 66234253 ~ 66317716 (-) True G1402604
TU1601814 lncRNA downstream 124034 66299646 ~ 66301517 (-) True G1402620
TU1601778 lncRNA downstream 219311 66205628 ~ 66206240 (-) True G1402588
TU1601775 lncRNA downstream 224048 66201159 ~ 66201503 (-) True G1402585
TU1601888 lncRNA upstream 15892 66442214 ~ 66447716 (-) False cdk16
TU1601872 lncRNA upstream 22422 66448744 ~ 66451848 (-) True cdk16
TU1601940 lncRNA upstream 64335 66490657 ~ 66494667 (-) False G1402707
TU1601945 lncRNA upstream 64335 66490657 ~ 66494667 (-) True G1402707
TU1601969 lncRNA upstream 98404 66524726 ~ 66525092 (-) True G1402728
XM_036947571.1 mRNA downstream 4487 66382003 ~ 66421064 (-) True si:dkey-32e6.6
XM_036947572.1 mRNA downstream 4489 66382003 ~ 66421062 (-) False si:dkey-32e6.6
XM_036947570.1 mRNA downstream 79908 66320422 ~ 66345643 (-) True bgnb
XM_036947569.1 mRNA downstream 92788 66320422 ~ 66332763 (-) False bgnb
XM_021566970.2 mRNA downstream 117484 66303589 ~ 66308067 (-) True b4galt3
XM_021566973.2 mRNA upstream 7626 66433948 ~ 66436902 (-) True tsr2
XM_036947579.1 mRNA upstream 24770 66451092 ~ 66470642 (-) False cdk16
XR_005036583.1 mRNA upstream 24770 66451092 ~ 66470642 (-) False cdk16
XR_005036584.1 mRNA upstream 24770 66451092 ~ 66470642 (-) False cdk16
XR_005036585.1 mRNA upstream 24770 66451092 ~ 66470642 (-) False cdk16
TU1600365 other downstream 670941 65720507 ~ 65754610 (-) True LOC110492562
TU1600638 other downstream 789179 65635482 ~ 65636372 (-) True G1401617
TU1599433 other downstream 1977079 64445355 ~ 64448472 (-) True si:ch211-117c9.5
TU1599394 other downstream 2115095 64309883 ~ 64310456 (-) True G1400578
TU1599378 other downstream 2139558 64285628 ~ 64285993 (-) True G1400565
TU1601943 other upstream 58579 66484901 ~ 66494667 (-) False G1402707
TU1602806 other upstream 1017099 67443421 ~ 67444179 (-) True G1403498
TU1604092 other upstream 2364867 68791189 ~ 68795025 (-) True LOC118939478
TU1604570 other upstream 2776964 69203286 ~ 69207158 (-) True G1404974
TU1604630 other upstream 2851505 69277827 ~ 69280359 (-) True G1405016

Expression Profile