RNA id: TU1601945


Basic Information

Item Value
RNA id TU1601945
length 3532
lncRNA type antisense_over
GC content 0.42
exon number 2
gene id G1402707
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 66484901 ~ 66494667 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTCTTTAATTTGGggaaaatacaacacattactgagtatcactctaCATATTCTCAACAccgtggtggctgcatcatgttatgggtatgcttgtaatcattaaggaccggtgagtttttcaagataaaaaagaaatggaatggagctaagcacaggcaaaacccTAGATGTGGTCTAATTGCACCTATCCTGACCGACAGTCCCCTCACCCTATCACCAACCACCATCCCCCTGTCCAATCCCCCTCCAGCAGAGGAGGGACTCCAGCTCCTTCACAACCTTTAAATTCCCACACCTGTCACTAATCAGTGTGGCAAATCTTACCATTTCTGTTTGTAAGTGGTTTGCTACAAGACACCTTTTCTCTTGTAACCCTTTCCTTTGTGTATTTGGATGCTTATGACCAAGTAACCATCCCATCCATACATCCTCAAACATGTTATCATCTGTCATCATTATCTTCACCAATTTAACTGAAATAATAAACCACAATCTCTAATGGGAACTGCACCACGCCCTAACTCAAACCAACAGTTACAGCAAGATACAGTCCTTTTACCAACACAACTCAGATCAGTTTTTAcactagagaaaaacctggttcagtctgctttccaccagataccgggagatgaattcaccttccagcaggacaataacctaaaacacaaaaccaGATCCACACtggggttgcttaccaagaagacagtgaatgttcctgaatggccgagttacagttatgacttaaatctacttgaaaatctctggcaagacctgaaaatagttgtctagcaatgattaacagCGCTTGAAGAATTCTGTAAAGAATACTAGGAAAATGTCCAGGTGTGGAacgctcttagagacgtacccagaaagactcacagctgtaatcgctgccaaaggtgcttctacaaagtattgactcaggggtgtgaatacttatataaatgagatatttctgtatttcattttcaacacatttgcaagcatttctaaaaacatgttttcactttgttatgaTGAActtttgtgtgtagatgggtgagaaaaacacTCCATGTTAttgattttgaattcaggctgtaacacaacaacatgtggaaataAGTCAAGCGGTAGGAgtactttatgaaggcactgtaactgacCCAATGTTTTCGTAATGATAAATTCGGTAATGATCTTAGGATGTACATGTTGTTTAAGTTAGAGTTATGTCAAATGTAGGTTTGGCAAGGTACTCGTCTGAGCACGACCCATCCTTTGCGATGTTAATAAAGACATTAATTGGATTTAAGCATTTGTCCGTTGTTCTCAATATCTTCATTATCATCACAACTCCAAACCCTTCATTACAAAGATGGGTTCAAAATAATCTGAGTAAAATCCATCATTAAAAATACGAATGTTCAGCAAATCTTGCAAGTATTAAACAATTGATGCCTGACAAGCAAGGTTTACAATTGATAAATTAATTTATAGGGCAGCAGGTAGtgtagcggttaagagcgttgggccagtaaccaaacggttgctggtttgaatcctggAACCAACTTGGTGAAAAATCGaccaacgtgcccttgagcaaagaacttaaccctaattgctcctgtaagttgctctgtataagtgtctactaaatgactaacatgtaataTACAACAATTTTACAAAATGTGAAGCATAAAGAATATAATGTAAAGCACTGCATTTTACTGTAATCACATCAGAAATATGGTAATAAGATGACTTCCTGATTTTATTCATCTTGGTTTGACTCCTATTACACAACACTAAGTAGTTTTAAACCGTCAAATAAAGGCTTTGTGAATAGGGACAATACACCCGCCCTTCCTTTTTGTGCTCCACTATGGCAGACGGAAGGATACAGAGAGCTCATTTAAATTAAACCCACATGGCAGTATTTACGCAGTAGTGTCAAAATGGTGCTGGGTCCTCTAAAAGTAGCAGGTAGGCCTTCCTTACAGACAGGTcagtgctatccgggatccttgggatgtccctaccaTAAAATGTAACCCTTACCCAACCTTAACCTTTACACTTACTTTAAccataaccattttaaatgtaaacttcaatggaccagggatgtcccaaggatcccaatTGCACAGAGCCTTTCAGATAGATGTTTTGTTTTCACAGTGCCACTCCTTAGTGTGTACATGGGCAGTAGGTAAGTAAACAAAGATACTGGATAAACATAGGTGCGGTAGGTGTTATTGAATATGAACCACGGCCTGTCACGTCTTTATCCCAAGAACACAGATTTCTCCAGGCCATCCTCCACTTTAGTGTACTCCAGGTGGGATTTGAAATATTTGCTCTCGTACCGGGGGCTGTTCCTGACATACTCCAAGTAGTCAGGGGTTCCAGAATACTCAATGATCTGACGAGCCACAGCGGCATAGTCTGGGTTGAACTCCAGGGTAATGAGCTTGGTGCCAGGGGGCAGCAGGCGGGCAATACGAACAGTGGAATAACCACAGTACGTACCCAGCTCCAGGGCAGTGGATGGACTAACCTCGCACACCACAGAGTCCAAGATGGCCCCTAAATACACAGACAGGACAATaatgtgactaacataactacaCAGTTCTTTGTGTAGTTTCCTAGGTAACATATGGCATATTACCACATACCAGTATATATTCAATAGTAACCGGTTATTTGACTGCCTGTGCTTGTGGCATGTGCTTCtggcacatgtgtgtgtgtcaagtacCCTTCTATGCATGTGCAGTCATGCAGATGTTTTATTGACCCAGAGAAACAGTACATTCATGACTGAGCTGTGATAAGTCTTAAGGCTATTCTCTCACAAAACAAGATAGACttgtagagggagggaagaatcCACAGGTCAACATTCAAGAGAGTGTGTAAGAACACACTGAGAGAGGAGGCAACCAGGAAATGCACGTGAAAGCAGAACACAAGGTGTACAATACCTTTCTCATCTCCCACATTCATGGCCCATTCAGAATGCCTGCAGAAGTAATCGATAGTAGAGATGACACTCTGAGGGTCTCCTTTGATTGCCTTCTTCTGAACTGCTCTCAGAAGACGCTGGGCATCAGAGGGAGAATGAGGGTTTGTGTGAGAAGAACCAGACCAGAAGAAACTTCTGATATTAATACAGGGGAaagatgtttttttaaagaagctaTGATATCTTCATCTTCTATCACTTTTCTGCACTAAAAAACGAGTGAATGTAACTGAGTAAACATGAGTTCCAAAGGGTGAAAGGTCTGAGAGGTCACCTGGGGTCGGGTGGATCGGGTGAGGATATTGAGTGCCCTCTCTACAATGGTGTCGTGCCAGAGCAGGGCCCACCATGCATTGTACTGCACAGCTGCAGGGATCAGCCAGGAATACAGGACATACAGAACAGCTGCTCCGCCACAGCACAAAGCCAGGAAAGACAGCAACATGCTGGGGAGGAAAAGACCAGACACACTGTTATAGGAGAGCACACTAGGGTACTGTTTCCCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1601872 lncRNA downstream 38809 66448744 ~ 66451848 (-) True cdk16
TU1601888 lncRNA downstream 42941 66442214 ~ 66447716 (-) False cdk16
TU1601865 lncRNA downstream 113817 66359441 ~ 66376840 (-) True G1402659
TU1601794 lncRNA downstream 172941 66234253 ~ 66317716 (-) True G1402604
TU1601969 lncRNA upstream 30059 66524726 ~ 66525092 (-) True G1402728
TU1601972 lncRNA upstream 36689 66531356 ~ 66531965 (-) True G1402731
TU1601973 lncRNA upstream 37981 66532648 ~ 66533823 (-) True G1402732
TU1601980 lncRNA upstream 52558 66547225 ~ 66547438 (-) True G1402739
TU1601982 lncRNA upstream 54783 66549450 ~ 66549712 (-) True G1402741
XM_036947580.1 mRNA downstream 11515 66451092 ~ 66479142 (-) False cdk16
XM_036947581.1 mRNA downstream 11516 66451092 ~ 66479141 (-) False cdk16
XR_005036587.1 mRNA downstream 20015 66451092 ~ 66470642 (-) False cdk16
NM_001165126.2 mRNA upstream 7365 66502032 ~ 66503955 (-) True abt1
XM_021566982.2 mRNA upstream 88436 66583103 ~ 66586795 (-) False zgc:86609
XM_021566981.2 mRNA upstream 88436 66583103 ~ 66587055 (-) True zgc:86609
XR_005036590.1 mRNA upstream 203971 66698638 ~ 66706256 (-) False LOC118939570
XM_021566996.2 mRNA upstream 243659 66738326 ~ 66767036 (-) True slc6a8
TU1601912 other downstream 64335 66425551 ~ 66426322 (-) False G1402686
TU1601915 other downstream 64335 66425551 ~ 66426322 (-) True G1402686
TU1600365 other downstream 736047 65720507 ~ 65754610 (-) True LOC110492562
TU1600638 other downstream 854285 65635482 ~ 65636372 (-) True G1401617
TU1599433 other downstream 2042185 64445355 ~ 64448472 (-) True si:ch211-117c9.5
TU1602806 other upstream 948754 67443421 ~ 67444179 (-) True G1403498
TU1604092 other upstream 2296522 68791189 ~ 68795025 (-) True LOC118939478
TU1604570 other upstream 2708619 69203286 ~ 69207158 (-) True G1404974
TU1604630 other upstream 2783160 69277827 ~ 69280359 (-) True G1405016
TU1604821 other upstream 3023088 69517755 ~ 69518113 (-) True G1405172

Expression Profile