RNA id: TU1601384



Basic Information


Item Value
RNA id TU1601384
length 352
RNA type TUCP
GC content 0.42
exon number 1
gene id G1402256
representative True

Chromosome Information


Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 66914365 ~ 66914716 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ccgcgatatgcaacttttcagggaagttaggaacaaatatacacagtcagttaggaaagcaaaggctagctttttcaaacaaaaatttgcatcctgtagcacaaattgtaaaaagttttgggacactgtaaagtccatggagaataagagcacctcctcccagctgcccgctgcactgaggctaggaaacactgtcaccactgataaatccacgataatcgatcatttcaataagcattctccttcacccaaaatttcaataagcttttccttcacccaaatccaggtagctgatgttctgaaagaggagcaaaatctggacccctacaaatcagcagggctagacaatctg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1601382 lncRNA upstream 1939 66912211 ~ 66912426 (+) True G1402254
TU1601381 lncRNA upstream 2508 66911635 ~ 66911857 (+) True G1402253
TU1601377 lncRNA upstream 21675 66892469 ~ 66892690 (+) True G1402249
TU1601374 lncRNA upstream 28387 66885754 ~ 66885978 (+) True G1402246
TU1601373 lncRNA upstream 28679 66885442 ~ 66885686 (+) True G1402245
TU1601485 lncRNA downstream 103633 67018349 ~ 67018648 (+) True G1402323
TU1601489 lncRNA downstream 108621 67023337 ~ 67025429 (+) True G1402325
TU1601424 lncRNA downstream 119883 67034599 ~ 67037537 (+) False LOC110492587
TU1601438 lncRNA downstream 119883 67034599 ~ 67038022 (+) False LOC110492587
TU1601425 lncRNA downstream 120092 67034808 ~ 67038022 (+) True LOC110492587
XM_036947588.1 mRNA upstream 187949 66703053 ~ 66726416 (+) False bcap31
XM_036947587.1 mRNA upstream 187949 66704319 ~ 66726416 (+) True bcap31
XM_036947586.1 mRNA upstream 212695 66689062 ~ 66701670 (+) True slc35a2
XM_021566991.2 mRNA upstream 226289 66684106 ~ 66688076 (+) True pim2
XM_021566988.2 mRNA upstream 231007 66659009 ~ 66683358 (+) False otud5a
XM_036947598.1 mRNA downstream 119683 67034399 ~ 67128826 (+) False LOC110492587
XM_036947595.1 mRNA downstream 119882 67034598 ~ 67128826 (+) False LOC110492587
XM_036947599.1 mRNA downstream 120145 67034861 ~ 67128826 (+) False LOC110492587
XM_036947593.1 mRNA downstream 121065 67035781 ~ 67128826 (+) False LOC110492587
XM_036947594.1 mRNA downstream 121065 67035781 ~ 67128826 (+) False LOC110492587
TU1601182 other upstream 370680 66543311 ~ 66543685 (+) True G1402066
TU1600817 other upstream 890120 66019001 ~ 66024245 (+) True G1401782
TU1600332 other upstream 1017302 65895891 ~ 65897063 (+) True G1401354
TU1599991 other upstream 1655521 65258515 ~ 65258844 (+) True G1401074
TU1599958 other upstream 1724090 65189990 ~ 65190275 (+) True G1401041
TU1602610 other downstream 557228 67471944 ~ 67476876 (+) False LOC110492593
TU1602611 other downstream 557228 67471944 ~ 67476745 (+) True LOC110492593
TU1602718 other downstream 738352 67653068 ~ 67653447 (+) True G1403412
TU1602769 other downstream 824246 67738962 ~ 67739702 (+) True G1403463
TU1602989 other downstream 858840 67773556 ~ 67777491 (+) True G1403655

Expression Profile