RNA id: TU1602424



Basic Information


Item Value
RNA id TU1602424
length 277
lncRNA type antisense_over
GC content 0.48
exon number 1
gene id G1403150
representative True

Chromosome Information


Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 67269856 ~ 67270132 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GACTGGTTTAGAGAGGGCCTGTCGTTTAGTTCACAGTCCCAGATGCTGTTTGTCTCCCCTTTACAGCTGTACTTCTTCCCCCACAAGAGATCATGATAATCTGCCTTTTCCTTAGCAGTATGTTTTATGTAGGCTCCACAGCCCAAGTCTTTGCACAAAACcttgctctctgtctcagtcCAACCATCGCTGCTGACAGCCCGACTATCTGCTTCACTGTACACAAACACGTACCCTTCACAAGTCCCGTTCCCTAGCTTCAACATCATTCTCCTCC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1602423 lncRNA downstream 299 67269098 ~ 67269557 (-) True G1403149
TU1602422 lncRNA downstream 889 67268659 ~ 67268967 (-) True G1403148
TU1602421 lncRNA downstream 1620 67267808 ~ 67268236 (-) True G1403147
TU1602420 lncRNA downstream 2244 67267337 ~ 67267612 (-) True G1403146
TU1602419 lncRNA downstream 2998 67266541 ~ 67266858 (-) True G1403145
TU1602428 lncRNA upstream 728 67270860 ~ 67271125 (-) True G1403154
TU1602425 lncRNA upstream 1138 67271270 ~ 67271552 (-) True G1403151
TU1602427 lncRNA upstream 4563 67274695 ~ 67275137 (-) True G1403153
TU1602426 lncRNA upstream 5238 67275370 ~ 67275809 (-) True G1403152
TU1602434 lncRNA upstream 8736 67278868 ~ 67279287 (-) True G1403160
XM_036947591.1 mRNA downstream 236811 67021935 ~ 67033045 (-) True LOC110492588
XM_021567004.2 mRNA downstream 236824 67021935 ~ 67033032 (-) False LOC110492588
XM_036947592.1 mRNA downstream 241078 67021935 ~ 67028778 (-) False LOC110492588
XM_036947589.1 mRNA downstream 257695 66822334 ~ 67012161 (-) False LOC110492586
XM_036947601.1 mRNA upstream 201812 67471944 ~ 67492651 (-) False LOC110492592
XM_036947602.1 mRNA upstream 201812 67471944 ~ 67492651 (-) True LOC110492592
XM_021567018.2 mRNA upstream 229533 67499665 ~ 67510144 (-) True LOC110492594
XM_036947610.1 mRNA upstream 242366 67512498 ~ 67535761 (-) False LOC110492595
XM_021567021.2 mRNA upstream 242366 67512498 ~ 67571084 (-) False LOC110492595
TU1601943 other downstream 775189 66484901 ~ 66494667 (-) False G1402707
TU1601912 other downstream 843534 66425551 ~ 66426322 (-) False G1402686
TU1601915 other downstream 843534 66425551 ~ 66426322 (-) True G1402686
TU1600365 other downstream 1515246 65720507 ~ 65754610 (-) True LOC110492562
TU1600638 other downstream 1633484 65635482 ~ 65636372 (-) True G1401617
TU1602806 other upstream 173289 67443421 ~ 67444179 (-) True G1403498
TU1604092 other upstream 1521057 68791189 ~ 68795025 (-) True LOC118939478
TU1604570 other upstream 1933154 69203286 ~ 69207158 (-) True G1404974
TU1604630 other upstream 2007695 69277827 ~ 69280359 (-) True G1405016
TU1604821 other upstream 2247623 69517755 ~ 69518113 (-) True G1405172

Expression Profile