RNA id: TU1602895


Basic Information

Item Value
RNA id TU1602895
length 259
lncRNA type intronic
GC content 0.47
exon number 1
gene id G1403583
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 67650104 ~ 67650362 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atgggggtgccacagggttcaatccttgggccgactctcttttctgtatacatcaatgatgttgctcttgctgctggtgattctctgatacacctctacgcagacgacaccattctgtatacttctggcccctctttggacactgtgttaactaacctccagacgagcttcaatgccatacaactctccttccgtggcctccaactgctcttaaatgcaagtaaaactaaatgcatgctattcaatcgatcactgcccg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1602877 lncRNA downstream 40809 67608870 ~ 67609295 (-) True LOC110491154
TU1602820 lncRNA downstream 51585 67573165 ~ 67598519 (-) True LOC118939572
TU1602825 lncRNA downstream 77200 67572452 ~ 67572904 (-) True G1403514
TU1602818 lncRNA downstream 78039 67571389 ~ 67572065 (-) True G1403507
TU1602847 lncRNA downstream 125288 67524490 ~ 67524816 (-) True G1403535
TU1602899 lncRNA upstream 5346 67655708 ~ 67656033 (-) True G1403587
TU1602900 lncRNA upstream 5974 67656336 ~ 67656555 (-) True G1403588
TU1602902 lncRNA upstream 7549 67657911 ~ 67658134 (-) True G1403590
TU1602910 lncRNA upstream 21003 67671365 ~ 67671662 (-) True G1403598
TU1602913 lncRNA upstream 23097 67673459 ~ 67673680 (-) True G1403601
XR_005036593.1 mRNA downstream 45138 67573721 ~ 67604966 (-) False LOC118939572
XR_005036594.1 mRNA downstream 45138 67573721 ~ 67604966 (-) False LOC118939572
XR_005036595.1 mRNA downstream 45138 67573721 ~ 67604966 (-) False LOC118939572
XM_036947612.1 mRNA downstream 45138 67598602 ~ 67604966 (-) False LOC118939572
XM_036947611.1 mRNA downstream 79017 67512498 ~ 67571087 (-) True LOC110492595
XM_036947628.1 mRNA upstream 122908 67773270 ~ 67875889 (-) False LOC110491155
XM_036947627.1 mRNA upstream 122908 67773270 ~ 68040540 (-) False LOC110491155
XM_036947631.1 mRNA upstream 126914 67777276 ~ 68040540 (-) False LOC110491155
XM_036947629.1 mRNA upstream 126914 67777276 ~ 68040541 (-) False LOC110491155
XM_036947630.1 mRNA upstream 126937 67777299 ~ 68040541 (-) False LOC110491155
TU1602806 other downstream 205925 67443421 ~ 67444179 (-) True G1403498
TU1601943 other downstream 1155437 66484901 ~ 66494667 (-) False G1402707
TU1601912 other downstream 1223782 66425551 ~ 66426322 (-) False G1402686
TU1601915 other downstream 1223782 66425551 ~ 66426322 (-) True G1402686
TU1600365 other downstream 1895494 65720507 ~ 65754610 (-) True LOC110492562
TU1604092 other upstream 1140827 68791189 ~ 68795025 (-) True LOC118939478
TU1604570 other upstream 1552924 69203286 ~ 69207158 (-) True G1404974
TU1604630 other upstream 1627465 69277827 ~ 69280359 (-) True G1405016
TU1604821 other upstream 1867393 69517755 ~ 69518113 (-) True G1405172
TU1605761 other upstream 2428295 70078657 ~ 70095541 (-) True G1405917

Expression Profile