RNA id: TU1602744


Basic Information

Item Value
RNA id TU1602744
length 274
lncRNA type intronic
GC content 0.68
exon number 1
gene id G1403438
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 67690573 ~ 67690846 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tggttagcgcacactgcgcccggcccgccacaggagtcgctggtgcgcgatgagacaacgacacccctaccgaccaagccctccctaacccgggcgacgctaggccaattgcgtcgccccacggacctcccggtcgcggccggttacgacagagcctgggcgcgaactcagggactctgatggcacagctggcgctgcagtacagcgcccttaaccactgcgccacccgggaggccctgagcaggcctttctaatcgacctggcccgggtatcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1602741 lncRNA upstream 4114 67686196 ~ 67686459 (+) True G1403435
TU1602737 lncRNA upstream 9669 67680678 ~ 67680904 (+) True G1403431
TU1602732 lncRNA upstream 20100 67670253 ~ 67670473 (+) True G1403426
TU1602731 lncRNA upstream 21283 67668931 ~ 67669290 (+) True G1403425
TU1602728 lncRNA upstream 24653 67665686 ~ 67665920 (+) True G1403422
TU1602745 lncRNA downstream 420 67691266 ~ 67691470 (+) True G1403439
TU1602749 lncRNA downstream 6994 67697840 ~ 67698056 (+) True G1403443
TU1602750 lncRNA downstream 7686 67698532 ~ 67698829 (+) True G1403444
TU1602751 lncRNA downstream 8380 67699226 ~ 67699591 (+) True G1403445
TU1602753 lncRNA downstream 13930 67704776 ~ 67706284 (+) True G1403447
XM_036947605.1 mRNA upstream 216880 67459278 ~ 67473693 (+) False LOC110492593
XM_036947638.1 mRNA downstream 584649 68275495 ~ 68279289 (+) False LOC110492619
XM_021567047.2 mRNA downstream 584651 68275497 ~ 68279289 (+) True LOC110492619
XR_005036609.1 mRNA downstream 610182 68301028 ~ 68345013 (+) False LOC110492620
XM_021564513.2 mRNA downstream 657927 68348773 ~ 68357169 (+) True LOC110491164
XM_036947640.1 mRNA downstream 705916 68396762 ~ 68405191 (+) False LOC110492622
TU1602718 other upstream 37126 67653068 ~ 67653447 (+) True G1403412
TU1602610 other upstream 213697 67471944 ~ 67476876 (+) False LOC110492593
TU1602611 other upstream 213828 67471944 ~ 67476745 (+) True LOC110492593
TU1601384 other upstream 775857 66914365 ~ 66914716 (+) True G1402256
TU1601182 other upstream 1146888 66543311 ~ 66543685 (+) True G1402066
TU1602769 other downstream 48116 67738962 ~ 67739702 (+) True G1403463
TU1602989 other downstream 82710 67773556 ~ 67777491 (+) True G1403655
TU1603513 other downstream 598669 68289515 ~ 68290086 (+) False G1404105
TU1603494 other downstream 628809 68319655 ~ 68343495 (+) True LOC110492620
TU1603714 other downstream 990600 68681446 ~ 68681977 (+) True G1404281

Expression Profile