RNA id: TU1602767



Basic Information


Item Value
RNA id TU1602767
length 340
lncRNA type intronic
GC content 0.46
exon number 1
gene id G1403461
representative True

Chromosome Information


Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 67734560 ~ 67734899 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


attttggcccccCTTTTCCATGCAGAACTGCATTAACTCAGCGACaattgtgggttttcaagcatgaactgctcgtttcaagtcctgccacaacatctcaattgggattaggtctggactttgactaggccctTCCAAAACATCCAATGTGTAgctttttaaccattttcatgtgtgttttggatcattgtcttgctgcatgacccagctgcacatcagcttcagctcacagacggatggcctgtcattctcctgtagaattctctgatacagagcagaattaatgcttccttctattaaggcaagtcatccaggtcctgaggcagcaaagcatcccccc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1602766 lncRNA upstream 935 67733331 ~ 67733625 (+) True G1403460
TU1602753 lncRNA upstream 28276 67704776 ~ 67706284 (+) True G1403447
TU1602751 lncRNA upstream 34969 67699226 ~ 67699591 (+) True G1403445
TU1602750 lncRNA upstream 35731 67698532 ~ 67698829 (+) True G1403444
TU1602749 lncRNA upstream 36504 67697840 ~ 67698056 (+) True G1403443
TU1602777 lncRNA downstream 36014 67770913 ~ 67771172 (+) True G1403471
TU1602778 lncRNA downstream 36895 67771794 ~ 67772429 (+) True G1403472
TU1602990 lncRNA downstream 38394 67773293 ~ 67774908 (+) False G1403655
TU1603004 lncRNA downstream 77917 67812816 ~ 67813737 (+) True G1403669
TU1603030 lncRNA downstream 131398 67866297 ~ 67868121 (+) True G1403692
XM_036947605.1 mRNA upstream 260867 67459278 ~ 67473693 (+) False LOC110492593
XM_036947638.1 mRNA downstream 540596 68275495 ~ 68279289 (+) False LOC110492619
XM_021567047.2 mRNA downstream 540598 68275497 ~ 68279289 (+) True LOC110492619
XR_005036609.1 mRNA downstream 566129 68301028 ~ 68345013 (+) False LOC110492620
XM_021564513.2 mRNA downstream 613874 68348773 ~ 68357169 (+) True LOC110491164
XM_036947640.1 mRNA downstream 661863 68396762 ~ 68405191 (+) False LOC110492622
TU1602718 other upstream 81113 67653068 ~ 67653447 (+) True G1403412
TU1602610 other upstream 257684 67471944 ~ 67476876 (+) False LOC110492593
TU1602611 other upstream 257815 67471944 ~ 67476745 (+) True LOC110492593
TU1601384 other upstream 819844 66914365 ~ 66914716 (+) True G1402256
TU1601182 other upstream 1190875 66543311 ~ 66543685 (+) True G1402066
TU1602769 other downstream 4063 67738962 ~ 67739702 (+) True G1403463
TU1602989 other downstream 38657 67773556 ~ 67777491 (+) True G1403655
TU1603513 other downstream 554616 68289515 ~ 68290086 (+) False G1404105
TU1603494 other downstream 584756 68319655 ~ 68343495 (+) True LOC110492620
TU1603714 other downstream 946547 68681446 ~ 68681977 (+) True G1404281

Expression Profile