RNA id: TU1602989


Basic Information

Item Value
RNA id TU1602989
length 3936
RNA type TUCP
GC content 0.46
exon number 1
gene id G1403655
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 67773293 ~ 67777491 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggtTTCCTGGTAAATTGAGGGTGGAAAGATTCCTTCTGCTCAAGGGTATTCACATCAGATGACTACTTACAGGTGTGAAGCATCGTTGCAgtgtagggcggcaggtagcctagcagttagaacATTTGACCAGTAACCCCAAGGTCGATATTTTGAATCCCCGTGaaaacaaggtgaaaaatctgttgatctgCACATGAGCAAGTCACTCAACCCAAATTGCTCCAGGGTCACGGTCAATAATGACAGATCCCTGGCCACGAACCCACTGTCAGGGGGAGTAAGGATATGCCAAATTCCCATTTCCAAACTTGTACAAGTTACCCACTTGTACATGcagtgaaacaggacaaatataagcacccacgaTTTGACCCTTTTGATGAAGCGCTGTCTGATAGGTAATATCTGtttattataaaatatattttaacattTACATTAATCGCAAAAAACCTACATTCAAATACACACAGCAATTTTACATGTATGTTGAGACCCCAATAGCACCATGTATAGCGAACAAATCTACTGTTATAAAGAATGCAGCATTTGTTAACTACATGTACTGTTCCATGTATTTTTATTTCTAAGAGAAACACGTGTAACTACAGTCTTTAGACCATGAAGTTATGGCCGATCGTGACTGTGTGGGCTTGTTTTACAAGCCAGCATGTTCTGAGTATCTCTAAGTGGTATTAGGCAGAATAAACTGCCAGGGTTGCTGTATAAGGTGAGTGGGTCATGAAACCTATGTCCCGCCCATCTCTGGGACACATCGGCTTGCAAAACAAGCACACCTTTTCTCTCTGAAGCCTTTGATGACATCAGAGAGAGGTAGTGGGGCACGTTCCTCTGCCCAGCCATTGGATAGTTATTTTACATATCAGCCAACCATATCATATGTCCTAGCAATCTGGTGCCCGACAGCACAGTCGATGACCTGGCACACAACCATTGCAACACAATACATGCAACAACGTCTTAGCAGGGGAACTCAACTGTGGACTGATGACTTCATGAAACAGACTTCCTGGATGAACCAACCAGACTAGACAAGTCAGGTTTACACATAGAGATGTATAAGGATCATTACATAGAAATAACACGTTTttgcatggacattgccattggggGCTTCCAGGCATTTTACAGTAGTCAACTGTGTAGAGATTCGTATGGGGTTGGGAGCGATCAGCCAATAAGCAGAGCATTGTCTTCTTCTTTAAAATGGTTTGCCTAGTTTGTAAATGGCTTCAAGCTATGtgactgccatctagtggccacaatAAATGAATGACACTAAATTTGGTTCAGGACTCCAGCACTGCAGGAGGCGATAAGACACCTATATTagtttacacttttttttttatctaaagaAGGAAGAAAAGGGACTATTTTAAAATGGAAATGGCTTCAGTGGTGCTGGCCATACTGTCACAGACACCATAATGGGACAGCTACAATGTTGTGACCTCTATACGTCTCAGTGGGTTCACATCAGATAAGTGCCTTCGATTGCATGTTTTCTGATTGGACTCTCTCAAAACGGTTAATGCCACAGCTACCAAGTTGTTAGCGGTAGATATATTTTCAGTAAAAACTCTTATTCTGTTCAACATCCAGAACTCAGTCATTTTGAAATGAAAATAAGAACACAACAAAAGGGAATGCTTTGATTCACATAAATATCAAGTCTCTTGTTTTTCATTACAAACATAGTAGAACTAAAATAAGCTGCAACACTGAAAATATACGGCACTTAGATGACACTCCCAGTTCCTACCTgcactccaaccctaaccacgGCCTCCTCGTGTCGGTTTGACGCCAAACTCAAAGGCAAGTTCCACAGCACTCacagtgtgtgaggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatcactgaACCTCATAATTGATCATCTGCATTTTGTGGAATTAAGTGTTTTCAAAAATGAATTAGTAACACATTGGTTAAAAAAAAGCCTTAATCAATGTGCCACATACACGTAATCAGCACAGGGGGGTGGAACCAGCACCAATTCATACACCCATTAGTAAAAACAAACAAAGTCAAATACACATATAGAATACACAATATTTTTTTCAAAGAATCCAATGAATATCAAAAATCAATCAAGTTTATTTTCCTCTCATATTCCCAAAGCTccccaaaaacaaaaaacaaagcaaAGTAACATCCTGCCATAGGAAAATAATCATGGGCTGCTTCTGCTGTGTTCGCTCATAAAGAATCAtgggctgctgctgctgtgttcGCTCATAAAGAATCATGGGCTGCTTCTGCTGTGTTCGCTCATAAAGAATCATGGGCTGCTTCTGCTGTGTTCGCTCATAAAGAATCAtgggctgctgctgctgtgttcGCTCATAAAGAATCAtgggctgctgctgctgtgttcGCTCATAAAGAATCATGGGCTGCTTCTGCTGTGTTCACTCATAAAGAATCAtgggctgctgctgctgtgttcGCTCATAAAGAATCAtgggctgctgctgctgtgttcGCTCATAAAGAATCAtgggctgctgctgctgtgttcGCTCATAAAGAATCATGGGCTGCTTCTGCTGTGTTCGCTCATAAAGAATCATGGGCTGCTTCTGCTGTGTTCGCTCATAAAGAATCAtgggctgctgctgctgtgttcGCTCATAAAGAATCATGGGCTGCTTCTGCTGTGTTCGCTCATAAAGAATCATGGGCTGCTGCTGTGTTCGTTCATAAAGAATCAtgggctgctgctgctgtgttcGTTCATAAAGAATCAtgggctgctgctgctgtgttcGCTCATAAAGAATCATGGGCTGCTGCTGTGTTCGTTCATAAAGAATCATGGGCTGCTGCTGTGTTCGTTCATAAAGAATCTCCTGGTGAAGTCCGTTGATGTATTACAGGAAGGGGCCAGCAGTGGGCCGTCTGCTGGCCTGGGATATGGTTGGGGCACTGGAGGACTGCAGTCTTGATTAAAGGGACAGGCTCGTCCCCATATCAGCCAGGAAGTGCTGCTGTggcctgaggaggaggagggtgagaatTTAAGCGGGTCTGGGTGGGGGACAGGCCAGAGGTGACATTGTGCTGATTCAGTCTCCCTAAAATCTCaggtgaggaggggagacagagtgagagaggggtctTACAGGCAGTCATACAGGCAACCCGTTCTCAGCTTCCTGAACAAAGTCACTGCACTGACAGTGAGCATGGTTCAGCCTCCACCGGGCCGACCGTCTCCTAAacaactcttcctcctcctcttcatcacccCTATCCCTGCCCTCCTCATCCTCGTCATGCAGTCTAGGCGGGCCCTCCTCCCCTAACTGgttgaggagaggtggggagtggTCCCAGTCTGAGCGGCCCTCCTCAGCTGGGActggaggacaggaagaggaggaggaggaggaggaagagcggTGCTCCCCTCCATTCAGCCCCAACGCCTCCCTCAGGACCTCGGCCGCAGCCTCTCTCAGCAGGAGAGCTGGAGTGGCCAGGGTGGTCAGGTAGATGGCTGAGGCTGATTGGTCCGTTGAGGATACCAGGGCGTggtctcttcctcctctaccctccccagGAATCAAGTTGCTGCTGCGCCCGTTCGGCTGGTGGTTGAAGTTGCCTAGCATCGTGAACATCCTGTCCACGGTCCAGTCAAAGTTGTCCCAGTCCTCCAGGCTGACGTTGAAGTTGAGTTTGAGATCATACGCGTGCTTGTCAAGTCTGTACAAGGGTTCAAGTTCTGACCAGTCCATTCCCGTTCCTCCTGCACTGGGTGCTTCTGACGGGGCCACTGTCGCCTCCTGGACCCTATCCCTCCCAGCCTTCCCAAATCTGTCCTCTGATGAGACAAGATCACACAGACAAAACAGTGTCATCCACAGCAAACCTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1602778 lncRNA upstream 1127 67771794 ~ 67772429 (+) True G1403472
TU1602777 lncRNA upstream 2384 67770913 ~ 67771172 (+) True G1403471
TU1602767 lncRNA upstream 38657 67734560 ~ 67734899 (+) True G1403461
TU1602766 lncRNA upstream 39931 67733331 ~ 67733625 (+) True G1403460
TU1602753 lncRNA upstream 67272 67704776 ~ 67706284 (+) True G1403447
TU1603004 lncRNA downstream 35325 67812816 ~ 67813737 (+) True G1403669
TU1603030 lncRNA downstream 88806 67866297 ~ 67868121 (+) True G1403692
TU1603059 lncRNA downstream 134219 67911710 ~ 67911910 (+) True G1403716
TU1603064 lncRNA downstream 140679 67918170 ~ 67918456 (+) True G1403720
TU1603096 lncRNA downstream 203132 67980623 ~ 67981028 (+) True G1403749
XM_036947605.1 mRNA upstream 299863 67459278 ~ 67473693 (+) False LOC110492593
XM_036947638.1 mRNA downstream 498004 68275495 ~ 68279289 (+) False LOC110492619
XM_021567047.2 mRNA downstream 498006 68275497 ~ 68279289 (+) True LOC110492619
XR_005036609.1 mRNA downstream 523537 68301028 ~ 68345013 (+) False LOC110492620
XM_021564513.2 mRNA downstream 571282 68348773 ~ 68357169 (+) True LOC110491164
XM_036947640.1 mRNA downstream 619271 68396762 ~ 68405191 (+) False LOC110492622
TU1602769 other upstream 33854 67738962 ~ 67739702 (+) True G1403463
TU1602718 other upstream 120109 67653068 ~ 67653447 (+) True G1403412
TU1602610 other upstream 296680 67471944 ~ 67476876 (+) False LOC110492593
TU1602611 other upstream 296811 67471944 ~ 67476745 (+) True LOC110492593
TU1601384 other upstream 858840 66914365 ~ 66914716 (+) True G1402256
TU1603513 other downstream 512024 68289515 ~ 68290086 (+) False G1404105
TU1603494 other downstream 542164 68319655 ~ 68343495 (+) True LOC110492620
TU1603714 other downstream 903955 68681446 ~ 68681977 (+) True G1404281
TU1604245 other downstream 1332223 69109714 ~ 69113350 (+) False G1404700
TU1604341 other downstream 1468054 69245545 ~ 69253709 (+) True G1404785

Expression Profile