RNA id: TU1603443


Basic Information

Item Value
RNA id TU1603443
length 512
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G1404059
representative False

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 68213291 ~ 68214106 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTCAGTGATTATTAGTGAACTGGACCCAGTCaataaactgtatgaatgtagtgattattagtgaactggacccagtcaataaactgtatgaatgtagtgattattagtgagctggacccagtcaataaactgtatgaatgtagtgattattagtgagctggacccagtcaataaactgtatgaatgtagtgattattagtgagctggacccagtcaataaactgtatgaatgtagtgattattagtgagctggacccagtcaataaactgtatgaatgtagtgattattagtgaactggacccagtcaataaactgtatgaatgtagtgattattagtgagctggacccagtcaataaactgtatgaatgtagtgattattagtgagctggacccagtcaataaactgtatgaatgtagtgattattagtgagctggacccagtcaataaactgtatgaatgtagtgattattagtgagctggacccagtcaataaactgtatgaatgtag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1603418 lncRNA downstream 23029 68190025 ~ 68190262 (-) True G1404035
TU1603413 lncRNA downstream 27651 68185359 ~ 68185640 (-) True G1404031
TU1603399 lncRNA downstream 58824 68154260 ~ 68154467 (-) True G1404017
TU1603398 lncRNA downstream 59979 68153096 ~ 68153312 (-) True G1404016
TU1603376 lncRNA downstream 61664 68151314 ~ 68151627 (-) True G1403999
TU1603448 lncRNA upstream 1912 68216018 ~ 68216248 (-) True G1404061
TU1603815 lncRNA upstream 67886 68281992 ~ 68335689 (-) True G1404348
TU1603836 lncRNA upstream 111625 68325731 ~ 68326012 (-) True G1404367
TU1603837 lncRNA upstream 113540 68327646 ~ 68327903 (-) True G1404368
TU1603842 lncRNA upstream 120435 68334541 ~ 68334953 (-) True G1404373
NM_001124722.1 mRNA downstream 28872 68183225 ~ 68184419 (-) True id1
XM_036947645.1 mRNA downstream 37080 68170026 ~ 68176211 (-) False LOC110492614
XM_036947646.1 mRNA downstream 37080 68170026 ~ 68176211 (-) True LOC110492614
LOC118939464 mRNA downstream 49324 68160807 ~ 68163967 (-) True LOC118939464
XM_036947630.1 mRNA downstream 172750 67777299 ~ 68040541 (-) False LOC110491155
XM_036947641.1 mRNA upstream 34939 68249045 ~ 68265345 (-) False LOC110492616
XM_036947643.1 mRNA upstream 34939 68249045 ~ 68265361 (-) True LOC110492616
XR_005036608.1 mRNA upstream 51331 68265437 ~ 68272147 (-) False LOC110492615
XM_021567043.2 mRNA upstream 51335 68265441 ~ 68272147 (-) True LOC110492615
XM_036947618.1 mRNA upstream 65248 68279354 ~ 68336933 (-) False LOC110492618
TU1602806 other downstream 769112 67443421 ~ 67444179 (-) True G1403498
TU1601943 other downstream 1718624 66484901 ~ 66494667 (-) False G1402707
TU1601912 other downstream 1786969 66425551 ~ 66426322 (-) False G1402686
TU1601915 other downstream 1786969 66425551 ~ 66426322 (-) True G1402686
TU1600365 other downstream 2458681 65720507 ~ 65754610 (-) True LOC110492562
TU1604092 other upstream 577083 68791189 ~ 68795025 (-) True LOC118939478
TU1604570 other upstream 989180 69203286 ~ 69207158 (-) True G1404974
TU1604630 other upstream 1063721 69277827 ~ 69280359 (-) True G1405016
TU1604821 other upstream 1303649 69517755 ~ 69518113 (-) True G1405172
TU1605761 other upstream 1864551 70078657 ~ 70095541 (-) True G1405917

Expression Profile